Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01148 ATGTCTTTTCGTCCTCCTTGTTTACTCTGCGAATTAGACCAAACGAGTTGGAAAAATATGGGTTCAGAGCAAAACGATGGCACAAGCTACCAACCATCGGAGCCGAAGCTTTGCGTGAACAACTGCGGCTTCTTTGGTTCAGCCGGTACCGAGAATCTCTGCTCGAAGTGCTACAGAGACTCTCGAATCAAAGAAGAGCAAGCGGCATCCGCAAAAGCAGCGATGGAGAAATCCCTTCAGTCCAAAATTTTCAAGCCGGCTGAAGGTAATTCTCCAGTTGTCTTCTCCGATTCATCTGTGGATTCAGCTTCGTCGTCATCATCCACTGGAAATTCCCTCGGCAGTTCCCACAAATCCCCATCACCGGATGTTCCAAACCGGTGCCGGAGCTGCAATAAGAAGGTGGGATTGATGGGGTTCAAATGCAAGTGCGATCTAACCTTCTGTGGAATTCACCGATACCCAGAGAAACACAACTGTTGTTACGACTTCAAAAGTGCTGGACGGGAGGAGATCGCCATAGCCAATCCTGTGGTGAGGGCCGATAAAGTTGAAAGGTTCTGA 564 48.76 MSFRPPCLLCELDQTSWKNMGSEQNDGTSYQPSEPKLCVNNCGFFGSAGTENLCSKCYRDSRIKEEQAASAKAAMEKSLQSKIFKPAEGNSPVVFSDSSVDSASSSSSTGNSLGSSHKSPSPDVPNRCRSCNKKVGLMGFKCKCDLTFCGIHRYPEKHNCCYDFKSAGREEIAIANPVVRADKVERF* 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13743517 13744394 - Chy9G168640.1 Chy09g01148 234045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01148 187 ProSiteProfiles Zinc finger A20-type profile. 32 66 IPR002653 GO:0003677|GO:0008270
Chy09g01148 187 PANTHER AN1-TYPE ZINC FINGER PROTEIN 20 187 - -
Chy09g01148 187 SMART A20_3 35 59 IPR002653 GO:0003677|GO:0008270
Chy09g01148 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 80 - -
Chy09g01148 187 Gene3D - 101 183 IPR035896 -
Chy09g01148 187 ProSiteProfiles Zinc finger AN1-type profile. 122 168 IPR000058 GO:0008270
Chy09g01148 187 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 20 187 - -
Chy09g01148 187 SMART AN1_Zf_4 128 165 IPR000058 GO:0008270
Chy09g01148 187 Pfam A20-like zinc finger 37 59 IPR002653 GO:0003677|GO:0008270
Chy09g01148 187 Pfam AN1-like Zinc finger 128 163 IPR000058 GO:0008270
Chy09g01148 187 Gene3D - 19 83 - -
Chy09g01148 187 MobiDBLite consensus disorder prediction 105 125 - -
Chy09g01148 187 SUPERFAMILY AN1-like Zinc finger 119 182 IPR035896 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01148 - - - csv:101209054 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01877 Chy-Chr1:24151199 Chy09g01148 Chy-Chr9:13743517 3.93E-37 dispersed
Chy09g01148 Chy-Chr9:13743517 Chy11g00908 Chy-Chr11:12490506 1.06E-43 dispersed
Chy09g01148 Chy-Chr9:13743517 Chy02g01445 Chy-Chr2:11531479 7.26E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g463 . . . . . . Bma07g01620 . . . . Cma15g01177 . Car15g01065 . . Cpe05g00274 . . . . . . . . . . . . . . . . . . . . Chy09g01148 . . . . Bda09g00071 . . . . . . Cmo15g01238 . . . . . . . . . . . . . . . . . . . . . . . Cme09g01680
Vvi16g510 . . . . . . . . . . . Cma15g01177 . Car15g01065 . . . . . . . . . . Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 . . . . Lsi05g01302 Csa05g00359 Chy09g01148 Cme06g00925 . . . . . . . . . . Cmo15g01238 . . . Car18g01105 Cpe09g00133 . Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla05g00813 Cam05g0896 . Cco05g0904 Clacu05g0887 Cmu05g0843 Cre05g0929 . Csa03g01639 . Cme09g01680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005235 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 4 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01148 Chy_Chr09 FPKM 34.289726 35.694241 32.548042 37.545071 17.140326 16.755537 18.516146 47.735733 45.351818 44.937443