Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01159 ATGGTTGTTCTTCCTTTCCTCTCTATTTTTTTCTTGCTCAACATTGAGAACCATTTTGCTGCAAAAGTTGAACTTTCAACTAGTCCCCTCCAAAGCAAACTTCAAACCTACATTGTCCATGTGGAGCAGCCAAAAATCAGACTTGTAGGTGAATCCTCAAACGATCATATTGATAATTGGTATATGTCATTTATACCGAAGTCCACAGAGACCACTGTCGAGCCTCCGCAGTTGCTTTATTCGTATCGAAATGTAACGAGTGGCTTCTCTGCAAGACTTACAATAGAACAAGTGAAAGCTATGGAGAAGAAAGATGGTTTCATATCAGCAATGCCTGAAACTATAATGAGTCTGCACACAACTCATACCCCTGAATATTTGGGGTTGAACCGGAAAAATTCAAACTTCGGTAAAGGAGTGATCGTAGGAGTATTGGATACTGGAATTCATCCAAAGCATCCTTCATTTAATGATGATGGAATGTCGCCACCACCGGCGAAATGGAGAGGGAGATGCGAGTTTAATAACTCTTTATGCAACAACAAATTGATTGGTGCAAGAACTTTCAACCTTGGAAACAATTTCTTGATGGAAGAATCACCTTCTGATGAAAAAGGACATGACACACACACTGCAAGCACAGCTGCTGGTGCATTTGTGGAAGACGCTGAAGCTTTAGGAAATGCTAAAGGCAAGGCGGCTGGTATAGCGCCTTTAGCTCATCTTGCAATTTATAAAATTTGTTCTGCTAAACGTTGCCCGAGTAGCGACGTATTTGCGGGGATAGATGCCGCTATTGATGATGGTGTCGATGTGCTATCGATTTCACTCGGGTCTCGCTCGGTTCCCTTTTTTTTTGGGGCAAGTACGATTAATCAAAGAGTCGTGGTGGTTGCCAAGCTTGGATATGGGGAAGAATATGAAGGAAAAGGAGGAGTTGGGAGAGTTGCAAAAGGATTAGTAGTAAAAAATGCTGGTGGGGCAGCCATGATTCTCATAAATCAACAAGAAGATGGATTTAGTACTCTGTCTGAAGCTCATGTTCTTCCAGCAACACATGTTAGCTATAAAGCTGAAGTCTTCATAAAATCCTACATAAACTCATCGCAGGACCCAACTGCATCAATCTCATTTAAAGGAACCATAATTGGAGACAATGATGATTTTTCAGCTCCATCCATGGCTTCTTTCTCTTCTCGAGGCCCCTGTCTCCCTAGCCCTAGGATCTTGAAACCTGACATTACAGGCCCTGGCGTCAACATTCTCGCAGCTTGGCCATTCCCATTAGACAACGACACGAACACCAAATCGACATTTAATGTTATTTCAGGAACGTCAATGTCTTGTCCTCACTTAAGTGGGATTGCAGCTTTGATCAAGAGTGTTCATCCTTATTGGTCTCCTGCTGCCATTAAATCTGCCATTATGACTACTGCAAACATAAAAACTCCTCAAGGGGAACCAATTATGGATCAAGATTTGAAACCGGCGAACTTTTTTGCGATGGGTGCGGGACATGTGAACCCATCAAAGGCAGCTGATCCAGGATTGGTTTATGACATTCAACCTCTTGATTACATTCCTTACCTTTGTGGTTTGTACAAAGATGAAGAAGTTTCAATTATTGTTCATAGAACAGTGGTTTGCGGATTAGTACCGAGTATTCGAGAAGGGGATTTGAAATATCCTTCGTTTAGTGTTGCGTTGGGAGGGTTGCAGACATTTAAAAGAACAGTGACAAATGTGGGTGAAGAGAACTCGGTCTATTCCGCCATTGTTGAAGCTCCGTTGGGAGTTTCCATGACGGTCATGCCGAGAAAATTGGTCTTCTCGAGGGTCAACCAAACAATGACGTTTTCGGTGACTTTTAGTCGGATTAGATCGGTTAAAATAATTGGTGAATTTGGTGAAGGGTATCTCAAATGGGTTTCTAAAAGTAAAAAATATGTTGTGAGGAGACCTGTTTCTGTGAAGTTTATTTAA 1983 41.86 MVVLPFLSIFFLLNIENHFAAKVELSTSPLQSKLQTYIVHVEQPKIRLVGESSNDHIDNWYMSFIPKSTETTVEPPQLLYSYRNVTSGFSARLTIEQVKAMEKKDGFISAMPETIMSLHTTHTPEYLGLNRKNSNFGKGVIVGVLDTGIHPKHPSFNDDGMSPPPAKWRGRCEFNNSLCNNKLIGARTFNLGNNFLMEESPSDEKGHDTHTASTAAGAFVEDAEALGNAKGKAAGIAPLAHLAIYKICSAKRCPSSDVFAGIDAAIDDGVDVLSISLGSRSVPFFFGASTINQRVVVVAKLGYGEEYEGKGGVGRVAKGLVVKNAGGAAMILINQQEDGFSTLSEAHVLPATHVSYKAEVFIKSYINSSQDPTASISFKGTIIGDNDDFSAPSMASFSSRGPCLPSPRILKPDITGPGVNILAAWPFPLDNDTNTKSTFNVISGTSMSCPHLSGIAALIKSVHPYWSPAAIKSAIMTTANIKTPQGEPIMDQDLKPANFFAMGAGHVNPSKAADPGLVYDIQPLDYIPYLCGLYKDEEVSIIVHRTVVCGLVPSIREGDLKYPSFSVALGGLQTFKRTVTNVGEENSVYSAIVEAPLGVSMTVMPRKLVFSRVNQTMTFSVTFSRIRSVKIIGEFGEGYLKWVSKSKKYVVRRPVSVKFI* 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13815579 13817782 - Chy9G168750.1 Chy09g01159 234056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01159 660 Gene3D - 530 659 - -
Chy09g01159 660 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 142 153 IPR023827 -
Chy09g01159 660 Gene3D Peptidase S8/S53 domain 120 529 IPR036852 GO:0004252|GO:0006508
Chy09g01159 660 Pfam Peptidase inhibitor I9 36 119 IPR010259 -
Chy09g01159 660 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 311 657 - -
Chy09g01159 660 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 311 657 IPR045051 -
Chy09g01159 660 CDD Peptidases_S8_3 118 480 IPR034197 -
Chy09g01159 660 ProSiteProfiles Serine proteases, subtilase domain profile. 112 513 - -
Chy09g01159 660 SUPERFAMILY Subtilisin-like 118 517 IPR036852 GO:0004252|GO:0006508
Chy09g01159 660 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 286 IPR045051 -
Chy09g01159 660 Pfam Subtilase family 137 485 IPR000209 GO:0006508|GO:0008236
Chy09g01159 660 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 119 IPR037045 -
Chy09g01159 660 PRINTS Subtilisin serine protease family (S8) signature 203 216 IPR015500 -
Chy09g01159 660 PRINTS Subtilisin serine protease family (S8) signature 137 156 IPR015500 -
Chy09g01159 660 PRINTS Subtilisin serine protease family (S8) signature 443 459 IPR015500 -
Chy09g01159 660 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 31 286 - -
Chy09g01159 660 Pfam Fibronectin type-III domain 559 657 IPR041469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01159 - - - cmo:103483066 1150.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01159 Chy-Chr9:13815579 Chy01g02163 Chy-Chr1:26261165 4.35E-141 dispersed
Chy09g01159 Chy-Chr9:13815579 Chy09g01163 Chy-Chr9:13834431 2.75E-178 proximal
Chy09g01158 Chy-Chr9:13808660 Chy09g01159 Chy-Chr9:13815579 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g436 . . . . . . . . . Cmo16g01025 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00343 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01159 Chy_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0