Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01169 ATGGCTTCTTCTTCTTCTTTAAGCTTCAATCGCTTCATGGTGGCATTGGTTTTGGCCATCTTCATAAGATCAACCCTCGCTGTGTTCCAACCAAGCCCATGGAAGCTTGCTCATGCCACCTTTTATGGCGACGAAACTGCCTCCGAGACTATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACGAACGGGTATGGAACTGATACTGTGGCTTTAAGCTCGACGCTGTTCAACAACGGCTACGCTTGCGGGACTTGCTTTCAAATCAAATGTGTGCAATCGAAGGCGTGCTACGCAAATGTGCCATTCACCACCGTGACAGCGACCAACCTGTGCCCGCCAAACTGGTCGCAGGACTCCAACGCTGGTGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCTAAGCCTGCCTTCATGAAGATTGCTTGGTGGAAGGCTGGAATTATCCCTGTTCAGTACCGCAGGGTTCCATGTGCGAAAAAAGGAGGAATTCGTTTCAGCTTGCAAGGAAATGGATATTGGTTATTAGTTTATGTGATGAATGTAGGAGGAGGAGGTGATGTATATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAACTGGGGAGCTTCATATCAAGCTTTTTCTTCATTGGGTGGCCAATCACTTTCATTCAGAATCACTTCTTACACAACTAGAGAAACACTTACTCTATGGAATGTTCTTCCTTCAAATTGGCAAGTTGGGTTGACTTACAATTCTAATTTCAACTTCCGTTGA 783 46.1 MASSSSLSFNRFMVALVLAIFIRSTLAVFQPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQYRRVPCAKKGGIRFSLQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFSSLGGQSLSFRITSYTTRETLTLWNVLPSNWQVGLTYNSNFNFR* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13884835 13886558 + Chy9G168850.1 Chy09g01169 234066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01169 260 Gene3D - 165 260 IPR036749 -
Chy09g01169 260 Pfam Lytic transglycolase 69 155 IPR009009 -
Chy09g01169 260 Gene3D - 20 161 IPR036908 -
Chy09g01169 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Chy09g01169 260 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Chy09g01169 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Chy09g01169 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Chy09g01169 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Chy09g01169 260 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Chy09g01169 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Chy09g01169 260 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Chy09g01169 260 Pfam Expansin C-terminal domain 166 244 IPR007117 -
Chy09g01169 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Chy09g01169 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Chy09g01169 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Chy09g01169 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Chy09g01169 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Chy09g01169 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Chy09g01169 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Chy09g01169 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
Chy09g01169 260 PANTHER EXPANSIN-A15 6 260 IPR002963 GO:0009664
Chy09g01169 260 PANTHER EXPANSIN-A7 6 260 - -
Chy09g01169 260 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Chy09g01169 260 SMART dpbb_1 69 155 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g01979 Chy09g01169 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01169 Chy-Chr9:13884835 Chy10g00538 Chy-Chr10:11972620 1.32E-93 dispersed
Chy06g01979 Chy-Chr6:23805963 Chy09g01169 Chy-Chr9:13884835 3.75E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01169 - - csv:101221231 545.428