Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01172 ATGGCGAGATTGTTTGGGCCAGCCATATTTGAAGCTTCGAAGCTAAAGGTTCTGTTTTTAGGGGTGGATGAGAAGAAACATCCAGGCAAATTTCCAAGGACTTATACGCTTACACACAGTGATATTACTTCTAAACTTACTCTTGCCATTTCTCAATCCATTAACAATTCTCAGTTACAAGGATGGTATAATTGGCTTCAAAGGGATGAAGTGGTAGGAGAATGGAAGAAAGTAAAGGGAAAAATGTCTCTTCATGTTCATTGTCATATCAGTGGTGGCCATTTTCTTCTAGATCTTTGTGCTAATCTCAGATACTTCATCTTTCGCAAAGAACTCCCTGTGGTGTTGAATGCTTTCGTCCATGGAGATGTGGATTTATTCAACAATTACCCTGAATTACAAGAGGCTATGGTTTGGGTTTATTTCCACTCCAAAATTCCAGAATTCAACAAGGTAGAGTGTTGGGGCCCACTCAAGGATCCAGCCCCACCTTCAAGTGGGCTTGATGGGCCCACTCAAAGCCAGCCCATGTTTGAATTGGGCCGGCTGGAGCGGCCCAAACCTTGTCAAGAAGATTGCAATTGTTGCTTCCCAACCATCCCTTCCATTTCATGGTCTCCTAAGAATAATGAGTTGGAGAGCACATAG 648 42.9 MARLFGPAIFEASKLKVLFLGVDEKKHPGKFPRTYTLTHSDITSKLTLAISQSINNSQLQGWYNWLQRDEVVGEWKKVKGKMSLHVHCHISGGHFLLDLCANLRYFIFRKELPVVLNAFVHGDVDLFNNYPELQEAMVWVYFHSKIPEFNKVECWGPLKDPAPPSSGLDGPTQSQPMFELGRLERPKPCQEDCNCCFPTIPSISWSPKNNELEST* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13909382 13910925 - Chy9G168880.1 Chy09g01172 234069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01172 215 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 1 211 - -
Chy09g01172 215 Pfam Staygreen protein 10 160 IPR024438 -
Chy09g01172 215 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC 1 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01172 K22013 SGR, SGRL; magnesium dechelatase [EC:4.99.1.10] - csv:101206296 442.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00556 Chy-Chr3:7930417 Chy09g01172 Chy-Chr9:13909382 4.26E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g423 . . . . . . . . . . . . Car02g01256 . . . Cpe05g00295 . . . . . . . . . . . . . . Cone8ag0338 . . . . . Chy09g01172 . . . . . . . . . . Cmo02g01535 . . . . . . . . . . . . . . . . . . . . . . . . Cme09g01705
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012467 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01172 Chy_Chr09 FPKM 14.588846 15.669568 14.09321 13.550969 7.998128 8.575786 8.925052 25.044876 21.993488 23.096704