Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy09g01173 | ATGAAGAGGATAGAGAATGCTACAAGCAGGCAAGTTACTTTTTCAAAGAGAAGAAATGGGTTACTGAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACAATTGATCGCTATCAAAACAGAACCAAAGATTTGATGTCAAACAGCACAGCTATTGAAGATGTGCAGTTGGAGAAGGAATACGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTATTGGGAGATGGGTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAGAGGCAACTTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGTATCAAATGCTGAAGGATGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGAAGTGAATCATCAAAAAAACAAGAAAGCAATCAGAGATCAGAATCATCAAACCATGAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAAAGAAGAAGCAATAATAACAATAATAATGCCTTCCTATAG | 636 | 37.11 | MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSNSTAIEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSKIRSRKYQMLKDEIMKLKEEEKMLLEENAALQIKVRSESSKKQESNQRSESSNHEEIMDVETELFIGPPERRSNNNNNNAFL* | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 13921137 | 13925972 | - | Chy9G168890.1 | Chy09g01173 | 234070 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy09g01173 | 211 | SUPERFAMILY | SRF-like | 1 | 67 | IPR036879 | GO:0003677|GO:0046983 | |
Chy09g01173 | 211 | Gene3D | - | 7 | 84 | IPR036879 | GO:0003677|GO:0046983 | |
Chy09g01173 | 211 | Coils | Coil | 114 | 134 | - | - | |
Chy09g01173 | 211 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 3 | 50 | IPR002100 | GO:0003677|GO:0046983 | |
Chy09g01173 | 211 | MobiDBLite | consensus disorder prediction | 165 | 187 | - | - | |
Chy09g01173 | 211 | PRINTS | MADS domain signature | 16 | 31 | IPR002100 | GO:0003677|GO:0046983 | |
Chy09g01173 | 211 | PRINTS | MADS domain signature | 31 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Chy09g01173 | 211 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 200 | - | - | |
Chy09g01173 | 211 | CDD | MADS_MEF2_like | 1 | 71 | IPR033896 | GO:0000977|GO:0045944 | |
Chy09g01173 | 211 | Pfam | K-box region | 82 | 164 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy09g01173 | 211 | ProSiteProfiles | MADS-box domain profile. | 1 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Chy09g01173 | 211 | MobiDBLite | consensus disorder prediction | 166 | 187 | - | - | |
Chy09g01173 | 211 | PANTHER | MADS BOX PROTEIN | 1 | 200 | - | - | |
Chy09g01173 | 211 | ProSiteProfiles | K-box domain profile. | 80 | 174 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy09g01173 | 211 | SMART | madsneu2 | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Chy09g01173 | 211 | Coils | Coil | 136 | 163 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy09g01173 | Chy-Chr9:13921137 | Chy12g01480 | Chy-Chr12:18701175 | 9.74E-43 | dispersed | |
Chy11g01998 | Chy-Chr11:25858106 | Chy09g01173 | Chy-Chr9:13921137 | 8.12E-57 | wgd | |
Chy06g00898 | Chy-Chr6:6546436 | Chy09g01173 | Chy-Chr9:13921137 | 4.51E-46 | wgd | |
Chy06g00217 | Chy-Chr6:1413102 | Chy09g01173 | Chy-Chr9:13921137 | 6.80E-24 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18510 | PF01486 | K-box | 3.70E-22 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy09g01173 | - | - | csv:101220518 | 345.895 |