Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01173 ATGAAGAGGATAGAGAATGCTACAAGCAGGCAAGTTACTTTTTCAAAGAGAAGAAATGGGTTACTGAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACAATTGATCGCTATCAAAACAGAACCAAAGATTTGATGTCAAACAGCACAGCTATTGAAGATGTGCAGTTGGAGAAGGAATACGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTATTGGGAGATGGGTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAGAGGCAACTTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGTATCAAATGCTGAAGGATGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGAAGTGAATCATCAAAAAAACAAGAAAGCAATCAGAGATCAGAATCATCAAACCATGAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAAAGAAGAAGCAATAATAACAATAATAATGCCTTCCTATAG 636 37.11 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSNSTAIEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSKIRSRKYQMLKDEIMKLKEEEKMLLEENAALQIKVRSESSKKQESNQRSESSNHEEIMDVETELFIGPPERRSNNNNNNAFL* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13921137 13925972 - Chy9G168890.1 Chy09g01173 234070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01173 211 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Chy09g01173 211 Gene3D - 7 84 IPR036879 GO:0003677|GO:0046983
Chy09g01173 211 Coils Coil 114 134 - -
Chy09g01173 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Chy09g01173 211 MobiDBLite consensus disorder prediction 165 187 - -
Chy09g01173 211 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Chy09g01173 211 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Chy09g01173 211 PANTHER MADS-BOX PROTEIN SOC1 1 200 - -
Chy09g01173 211 CDD MADS_MEF2_like 1 71 IPR033896 GO:0000977|GO:0045944
Chy09g01173 211 Pfam K-box region 82 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy09g01173 211 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Chy09g01173 211 MobiDBLite consensus disorder prediction 166 187 - -
Chy09g01173 211 PANTHER MADS BOX PROTEIN 1 200 - -
Chy09g01173 211 ProSiteProfiles K-box domain profile. 80 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy09g01173 211 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Chy09g01173 211 Coils Coil 136 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01173 Chy-Chr9:13921137 Chy12g01480 Chy-Chr12:18701175 9.74E-43 dispersed
Chy11g01998 Chy-Chr11:25858106 Chy09g01173 Chy-Chr9:13921137 8.12E-57 wgd
Chy06g00898 Chy-Chr6:6546436 Chy09g01173 Chy-Chr9:13921137 4.51E-46 wgd
Chy06g00217 Chy-Chr6:1413102 Chy09g01173 Chy-Chr9:13921137 6.80E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18510 PF01486 K-box 3.70E-22 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01173 - - csv:101220518 345.895