Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01175 ATGCAAGAACCTGGGTTGGGAATGATGACTGCAGCAGGTGGGTCTAGTGGTGGCTTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGAGTTCATAACAGTCAACTGAAAGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGCTTCCGATGATCGATGCCCAGCTTTCTCAATCCCACCATATTTTGCGCTCTTATGCTTCTTCTCAACAGCATCACCAAAATGCTCATTCCTTAACGCCTCACGAGCGACAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGTTCTTTCAAAGAGCAGCTTCAACAACATGTAAGAGTCCACGCAGTTGAAGCTGTTATGGCGTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTAAGCCTTGGTGAAGGAACCGGCGCAACAATGTCGGACGACGAAGACGACATTCCGATGGACTTTTCGCTCGATCAATCTGGAGCCGATGCACACGACATGATGGGATTCGGACCACTGCTTCCAACTGAATCCGAAAGGTCATTGATGGAGAGGGTCCGCCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGGGAGGAAATATTGAGAAAAAGAAGGGCAGGGAAGTTACCTGGGGATACAACAACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAATGGCCATACCCAACTGAAGACGATAAGGCCAAGCTAGTGGAGGAGACAGGTTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCTTTGAAGTCCAAGCGCAAGAGATAA 906 46.58 MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13952596 13956084 + Chy9G168910.1 Chy09g01175 234072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01175 301 Gene3D - 223 297 - -
Chy09g01175 301 SMART HOX_1 226 291 IPR001356 GO:0003677
Chy09g01175 301 MobiDBLite consensus disorder prediction 1 20 - -
Chy09g01175 301 SUPERFAMILY Homeodomain-like 226 291 IPR009057 -
Chy09g01175 301 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 301 - -
Chy09g01175 301 CDD homeodomain 227 288 IPR001356 GO:0003677
Chy09g01175 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Chy09g01175 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Chy09g01175 301 SMART KNOX2_2 93 148 IPR005541 GO:0003677|GO:0005634
Chy09g01175 301 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
Chy09g01175 301 Pfam KNOX2 domain 97 147 IPR005541 GO:0003677|GO:0005634
Chy09g01175 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Chy09g01175 301 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Chy09g01175 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01099 Chy-Chr3:14381849 Chy09g01175 Chy-Chr9:13952596 7.44E-135 dispersed
Chy09g01175 Chy-Chr9:13952596 Chy10g00887 Chy-Chr10:14651229 1.04E-17 dispersed
Chy09g01175 Chy-Chr9:13952596 Chy07g00355 Chy-Chr7:2902533 2.41E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18511 PF03791 KNOX2 7.70E-18 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01175 - - csv:101206054 574.704