Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01177 ATGCAGTCTCCTTGTATTAGAGAGGCTTCACAGGCCTGCCTTCGAGGCTGCTGTCGAACTCCATTTCTCGGTCTTACTGATTCTTCACAGACTGCAATTGACAGATCTTCTGCAGCTTCAACTCCTGCATACAACTTTCATGGCACAACGGAAACATCTCTTCATCCAGATGCTCGATTCTCCGATCATGAATCCATCCCTACCCTAAAGGATGCTTTTACTTACTTCATTAGGGCATACCCTCTCTACCTTGACACACAACAGATCGACCGAATCCGAGCTGATGAATATAATCATCTTGCTCTCTCCAAACATGTTTGTCTCGATTACAATGGTCAGTGTCTCTTTTCTTTTGCTCAACAGCAAAGTTCTCCAATGGCTCCAGCTGCTTCTTCCTCTTCTCCACCAGGCTCCCCTCCTCTAATTCTGCATTCCCCAGGATCACCATTCTTCAACATTTCCCATAAAGCAGTCAAACCAAAATCCCAGGTGAAGAATGGTGGTCAAGGATCAAAATTTGAGTCTAGAATTAGAAGTAGAATTATGAAGTTTATGAACTTATCAGAAGATGATTATACTATGGTGTTCACAGCCAATCAATCATCAGCCTTCAAACTACTAGCAGACACTTACCCTTTTCAGCAAAACAGAAATTTGATCACAGTTTATGATCACGAGAGTGAGGCAGTTGATTTGATGGTTGAAAGCTCCAGGAAGAAAGGAGCAAGAATCTATTCCGCAGAGTTCTTATGGCCAAACCTAAACATCTCTACCGGAAAATTAAGAAGACTAATAGTCAGTAAACGGAAGAGGAAGATGAAGATGAACAAAAGGGGGTTATTTGTACTCCCACTTCAGTCAAGATTAACAGGAACCCCATATTCATATCAATGGCTAAACATAGCTCGAGATAACGAATGGGATGTCTGCCTAGATACATGTGCACTAGGGCCAAAAGACATGGAAACTTTAGGCCTCTCGCTTTTCAAGCCCGAATTTCTAATTTCTTCTTTCTACAAAGTTTTTGGCGAAAACCCATCAGGGTTTGGCTGTTTGTTCATCAAGAAATCCAGTGTTTCATTGATGGAGAGTTTACTCACCTCCCCTGCAAACATTGGCGTTATAAGTCTTATCTCAACATCACCATCATTTCCGATTCCAGAAGAACCTGAAACTACAGAAATCAAAACTCAACAAATTTCAAAACCCACCCTAGAAATTCAAAATCTAGCTATACCAGAGTCGCGAAATTCACCTGAAATCACTGAAGCCACAGAAATCGAAGAGGAAGAACTCTCAATCACAGGAATCGTCGAATCGACAACACCTTTCGTATCCACTCGATCAACCAACACCGAAATGAACTCATATATGGATTGCAGAGGCTTAGATCACGCAGATTCAGTAGGTCTAAGATTAATAAGCATTAGAGCAAGATACCTGATCAATTGGCTAACAAATGCATTGATGAATCTACAACACCCAAATCCAGAAGGAGGGATTGCTAAAGCTCTAGTGAGAATCTACGGCCCGAAAATCGAAATCAATCGAGGACCCGCCGTGGCATTCAACATATTCGACTGGAAAGGGGAAAAAGTAGACCCAGCAATGGTTCAGAAGCTTGCTGATCGGAGCAATATTTCGTTGAGCAATGGAATTGTGAAGGAGGTAAGTTTCTTGGATAAGAATGAAGAGGAAAATGAGATGAGGAAGGAGAGAGCGATGGAGGAAGGAGAAACAATTGATAGAAATGAGAAACGCCATTGTCGGATAAGGGTGGTGAGTGCAGGGATTGGATTTTTAACGAATTTTGAAGATGTTTATAAGTTTTGGGCGTTTGTTTCAAGGTTTTTGGATGCAGATTTTGTGGAGAAAGAGAGATGGAGATATATGGCTCTTAATCAAAAAACCATTGAAGTTTGA 1923 41.39 MQSPCIREASQACLRGCCRTPFLGLTDSSQTAIDRSSAASTPAYNFHGTTETSLHPDARFSDHESIPTLKDAFTYFIRAYPLYLDTQQIDRIRADEYNHLALSKHVCLDYNGQCLFSFAQQQSSPMAPAASSSSPPGSPPLILHSPGSPFFNISHKAVKPKSQVKNGGQGSKFESRIRSRIMKFMNLSEDDYTMVFTANQSSAFKLLADTYPFQQNRNLITVYDHESEAVDLMVESSRKKGARIYSAEFLWPNLNISTGKLRRLIVSKRKRKMKMNKRGLFVLPLQSRLTGTPYSYQWLNIARDNEWDVCLDTCALGPKDMETLGLSLFKPEFLISSFYKVFGENPSGFGCLFIKKSSVSLMESLLTSPANIGVISLISTSPSFPIPEEPETTEIKTQQISKPTLEIQNLAIPESRNSPEITEATEIEEEELSITGIVESTTPFVSTRSTNTEMNSYMDCRGLDHADSVGLRLISIRARYLINWLTNALMNLQHPNPEGGIAKALVRIYGPKIEINRGPAVAFNIFDWKGEKVDPAMVQKLADRSNISLSNGIVKEVSFLDKNEEENEMRKERAMEEGETIDRNEKRHCRIRVVSAGIGFLTNFEDVYKFWAFVSRFLDADFVEKERWRYMALNQKTIEV* 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13964593 13966515 - Chy9G168930.1 Chy09g01177 234074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01177 640 Gene3D - 153 376 IPR015421 GO:0003824
Chy09g01177 640 Gene3D Aspartate Aminotransferase, domain 1 447 626 IPR015422 GO:0003824
Chy09g01177 640 PANTHER MOLYBDENUM COFACTOR SULFURASE-LIKE PROTEIN 3 640 - -
Chy09g01177 640 SUPERFAMILY PLP-dependent transferases 174 367 IPR015424 -
Chy09g01177 640 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 3 640 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01177 - - - csv:101220052 1160.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00943 Chy-Chr9:12190964 Chy09g01177 Chy-Chr9:13964593 0 dispersed
Chy09g01177 Chy-Chr9:13964593 Chy11g00137 Chy-Chr11:1453862 1.07E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g414 . . . . . . . . . . Cma02g01490 . Car02g01248 . . . Cpe05g00301 . . . . . . . . . . . . . . . . . Cone15ag0129 . Csa05g00332 Chy09g01177 . . . . . . . . . . Cmo02g01529 . . . . . . . Bhi12g00186 . . Lac11g2149 Hepe06g1593 . Lcy12g1710 Cla01g00309 Cam01g0321 Cec01g0312 Cco01g0329 Clacu01g0322 Cmu01g0307 . Lsi09g00317 . . Cme09g01710
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013740 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01177 Chy_Chr09 FPKM 3.081349 2.428829 4.316427 4.690189 3.041285 2.861187 2.970397 4.376521 4.629767 5.648634