Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01190 ATGTCCAAAATGAAATGCAACTTTCCAGAAGAAATTCCCTTTCTTTCTCCGATCCTTCGGTTTCAACTGAGGGGTATACTCGTCATTTCCTCTTCCGCCATTGTTTCAAATATAAGTAATTTTTCTGAGCTTCCTCGCATTCCACCTCTACCTGAACCACCGACTGTTACATATATAGAGAAACTGCGAACTAAAATCAAAATCCCCAATCTATTCATCGAAGTAAAAGTACCCATTAGAAAGAAAAAAAACCCTTCAATTCCCTCTTCCATCATTGAGAAACCAAAGCTTGAAGCTTCTATACAGAAACAGAGTGGAACTATGTCGAATCAAGATCTTGAGCGAGGAGCAGCTAAGAATCCACCCAATACTAACCCAAATGCTAACTATTCAACTTCTCCTTACTACATAGAAACCTCTGAGAAGCAATGGACTCCTTGGTTGATTCCTATGTTTGTTGTGGCTAATATTGCTATGTTCATTGTGGTCATGTACGTCAATAATTGCCCTGATTCTAATCTGGGTTTTGGAGATAAGTGTGTGGCTGGTTTTCTTGGACGATTTTCGTTTCAGCCTATCAGGGAGAACCCCCTCTTGGGACCTTCTTCCAATACATTGGTGAAATTGGGAGCTCTGAAGTGGAGTAAGGTTGTTCATGAGCATCAAGGATGGAGACTTTTGTCTTGTATCTGGTTGCACGCTGGAATCATTCATCTTCTTGCTAATATGTTGAGTTTGGTTCTGATTGGAATCCGCCTGGAGCAACAATTTGGATTTGTGCGTATCGGGATGATATACCTTGTGGCTGGAGTTGGTGGGAGTGTGATGTCTTCTCTTTTCATTCAAAACAATATTTCTGTTGGTGCTTCTGGTGCCCTCTTTGGACTTCTTGGAGCTATGCTATCCGAGCTTTTGACAAACTGGACGATTTACACCAACAAGGTTGCTGCACTCTTCACCCTCATTGTCATCGTTGTTATCAACTTAGCAGTTGGAATTCTACCTCACGTCGACAACTTCGCCCACATTGGAGGATTCTTAACAGGGTTCCTTCTCGGGTTTATATTGCTTGTCCGTCCACAGTTCAAGTGGACAGAGCGCCACCATCTCCCACCTGGTGCTCAACGTGTACCCAAGTATAAAACTTATCAGTATATTCTCTGGCTGGCAGCTGCAATTCTACTAGTTGCTGGCTTTACCCTGGGCCTGGTGATGCTATTCAGAGGTGAGAATGGAAACAAGCACTGCAGCTGGTGCCATTACCTGAGTTGTGTGCCAACCTCAAGATGGGACTGCGCAAATTAA 1305 43.22 MSKMKCNFPEEIPFLSPILRFQLRGILVISSSAIVSNISNFSELPRIPPLPEPPTVTYIEKLRTKIKIPNLFIEVKVPIRKKKNPSIPSSIIEKPKLEASIQKQSGTMSNQDLERGAAKNPPNTNPNANYSTSPYYIETSEKQWTPWLIPMFVVANIAMFIVVMYVNNCPDSNLGFGDKCVAGFLGRFSFQPIRENPLLGPSSNTLVKLGALKWSKVVHEHQGWRLLSCIWLHAGIIHLLANMLSLVLIGIRLEQQFGFVRIGMIYLVAGVGGSVMSSLFIQNNISVGASGALFGLLGAMLSELLTNWTIYTNKVAALFTLIVIVVINLAVGILPHVDNFAHIGGFLTGFLLGFILLVRPQFKWTERHHLPPGAQRVPKYKTYQYILWLAAAILLVAGFTLGLVMLFRGENGNKHCSWCHYLSCVPTSRWDCAN* 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14107107 14109820 - Chy9G169060.1 Chy09g01190 234087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01190 434 PANTHER RHOMBOID-LIKE PROTEIN 110 434 - -
Chy09g01190 434 SUPERFAMILY Rhomboid-like 143 363 IPR035952 -
Chy09g01190 434 Gene3D - 179 361 IPR035952 -
Chy09g01190 434 PANTHER RHOMBOID-RELATED 110 434 IPR002610 GO:0004252|GO:0006508|GO:0016021
Chy09g01190 434 MobiDBLite consensus disorder prediction 103 129 - -
Chy09g01190 434 Pfam Rhomboid family 218 359 IPR022764 GO:0004252|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01190 - - - csv:101203649 622.854
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g00923 Chy09g01190 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01009 Chy-Chr3:13648245 Chy09g01190 Chy-Chr9:14107107 1.50E-69 dispersed
Chy04g02151 Chy-Chr4:26686874 Chy09g01190 Chy-Chr9:14107107 1.75E-144 dispersed
Chy09g01190 Chy-Chr9:14107107 Chy12g00203 Chy-Chr12:2440701 2.54E-124 dispersed
Chy08g00533 Chy-Chr8:12633141 Chy09g01190 Chy-Chr9:14107107 9.15E-06 transposed
Chy04g00264 Chy-Chr4:2351857 Chy09g01190 Chy-Chr9:14107107 1.34E-07 transposed
Chy06g00923 Chy-Chr6:6784141 Chy09g01190 Chy-Chr9:14107107 1.01E-164 wgd
Chy06g01972 Chy-Chr6:23742613 Chy09g01190 Chy-Chr9:14107107 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g614 . Blo15g00159 . . . Bpe07g00948 . . Cmo16g00147 . . Cma15g01202 . Car15g01089 . . Cpe14g00119 . . . . . . . Cla01g00295 Cam01g0306 Cec01g0296 Cco01g0313 Clacu01g0306 Cmu01g0291 Cre09g2217 . . . . Lsi05g01251 Csa05g00318 Chy09g01190 Cme06g00976 . . Bda06g00673 Bda15g00736 . Bpe12g00418 . . . . . Cma16g00141 . . . . Cpe13g00173 Bhi12g00209 . . Lac11g2129 Hepe06g1577 . Lcy12g1689 Cla05g00860 Cam05g0946 Cec05g0951 Cco05g0951 Clacu05g0933 Cmu05g0891 Cre05g0976 . Csa03g01690 Chy06g00923 Cme09g01724
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000228 6 5 4 5 7 5 5 5 5 5 4 5 7 5 5 6 5 6 6 5 5 5 5 5 5 4 5 12 7 4 163
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01190 Chy_Chr09 FPKM 35.709549 40.345909 19.024199 18.824837 24.909609 27.089964 23.890291 9.303216 9.838696 9.460201