Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01192 ATGGCTCCGTCGCCGGCCGAACCGATCGGCGATTCGGGAACGGGAGATTCTCAGAGATCTATACCCACGCCGTTTCTAACGAAAACTTATCAACTGGTGGATGATCCGGCGGTGGATGATCTTATCTCCTGGAATGAAGATGGATCTACTTTCATAGTTTGGCGACCGGCTGAATTTGCTCGAGATTTACTTCCGAAATACTTTAAGCACAATAATTTCTCTAGTTTCGTCCGTCAACTCAACACTTACGGATTCCGAAAGGTTGTGCCGGACCGATGGGAATTTGCGAATGATTGTTTCCGGAAAGGTGAGAAAGGACTTCTCCGAGACATTCAGCGGCGGAAAGTAGTGCTGTCGGTAACGACGTCGGCTGCGGTGGCTGTGCCGGTGACGGGAGCAGCGTCTCCAGCTGTGTTAGCTCACGTGATATCGCCGGCGAACTCTGCGGAAGAGCAGGTTACGTCCTCGAATTCATCGCCGATGGCATTCCAACGAAGTACGAGCTGCACCACGACGCCAGAACTTGCAAGAGAGAACGAACGGTTAAGGAAAGAGAATATGCAACTGAGTCACGAGTTGACTCAGTTGAAAGGACTCTGTAACAACATACTATCGTTAATGACGAATTACGCTTCAGGTCAGCACCAGCAGTTGGAGTCGGGGAGCATCCGGGACGGAAAGGCGTTGGAGCTCTTACCGGCAAGACAGGTGATGGAAGACGAAGGAGCCGTCAGTGACGGGGCTCATGAGGTGAGACTAAAAATGGAGGAGAAGATGACAGCGGCGGTAGGAATGACGCCAAAACTGTTCGGAGTGTCGATCGGAGTGAAACGGATGAGGAGAGAGGTAGAGGAGGAAGAAGAAGAGATGGTGGGGCAAAATCATGTACAGTCGGAAGAAGGTGAGACCGGGTCAGAGATCAAAGCCGAACCGTTGGATGAAAACTCTGAACATCCAGATGGATCCGCGTCGCCGTGGCTTGAACTCGGGAATCAAGGCTCCTGA 1005 51.74 MAPSPAEPIGDSGTGDSQRSIPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRKGEKGLLRDIQRRKVVLSVTTSAAVAVPVTGAASPAVLAHVISPANSAEEQVTSSNSSPMAFQRSTSCTTTPELARENERLRKENMQLSHELTQLKGLCNNILSLMTNYASGQHQQLESGSIRDGKALELLPARQVMEDEGAVSDGAHEVRLKMEEKMTAAVGMTPKLFGVSIGVKRMRREVEEEEEEMVGQNHVQSEEGETGSEIKAEPLDENSEHPDGSASPWLELGNQGS* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14116864 14118037 - Chy9G169080.1 Chy09g01192 234089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01192 334 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 320 IPR027725 -
Chy09g01192 334 MobiDBLite consensus disorder prediction 283 334 - -
Chy09g01192 334 MobiDBLite consensus disorder prediction 151 172 - -
Chy09g01192 334 MobiDBLite consensus disorder prediction 283 317 - -
Chy09g01192 334 Coils Coil 276 296 - -
Chy09g01192 334 MobiDBLite consensus disorder prediction 1 21 - -
Chy09g01192 334 Coils Coil 172 199 - -
Chy09g01192 334 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy09g01192 334 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy09g01192 334 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy09g01192 334 SUPERFAMILY Winged helix DNA-binding domain 22 114 IPR036390 -
Chy09g01192 334 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy09g01192 334 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy09g01192 334 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy09g01192 334 Gene3D - 17 115 IPR036388 -
Chy09g01192 334 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 12 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01192 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101203886 609.372
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g00930 Chy09g01192 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01552 Chy-Chr3:17688406 Chy09g01192 Chy-Chr9:14116864 5.07E-61 dispersed
Chy07g00142 Chy-Chr7:1211443 Chy09g01192 Chy-Chr9:14116864 5.48E-64 dispersed
Chy09g01192 Chy-Chr9:14116864 Chy06g02159 Chy-Chr6:25885527 9.58E-46 dispersed
Chy02g00913 Chy-Chr2:5963201 Chy09g01192 Chy-Chr9:14116864 3.70E-24 transposed
Chy04g01608 Chy-Chr4:22545690 Chy09g01192 Chy-Chr9:14116864 1.96E-51 transposed
Chy08g00462 Chy-Chr8:11346063 Chy09g01192 Chy-Chr9:14116864 4.68E-51 transposed
Chy06g00930 Chy-Chr6:6839586 Chy09g01192 Chy-Chr9:14116864 1.55E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01560 . 79 319 HSF AT4G17750 51.4 1.0e-59 228.0
Chy03g01653 . 43 243 HSF AT4G17750 52.7 1.1e-58 224.6
Chy05g00425 . 26 226 HSF AT4G17750 54.8 1.2e-57 221.1
Chy05g01447 . 58 251 HSF AT4G17750 50.7 9.9e-47 184.9
Chy12g00055 CCT,ECH 13 157 HSF AT4G17750 55.4 9.6e-42 168.3
Chy11g00979 . 12 114 HSF AT4G17750 68.9 5.3e-40 162.5
Chy03g01552 . 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Chy07g00142 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Chy09g01192 CCT 20 117 HSF AT4G17750 69.4 9.3e-37 151.8
Chy05g00425 . 41 226 HSF AT5G16820 56.7 1.6e-57 220.7
Chy01g01560 . 80 287 HSF AT5G16820 54.2 3.9e-56 216.1
Chy03g01653 . 44 243 HSF AT5G16820 53.6 1.5e-55 214.2
Chy05g01447 . 59 251 HSF AT5G16820 51.0 1.5e-44 177.6
Chy12g00055 CCT,ECH 9 155 HSF AT5G16820 56.7 2.9e-43 173.3
Chy11g00979 . 9 115 HSF AT5G16820 68.2 1.6e-38 157.5
Chy06g02159 . 13 514 HSF AT1G32330 53.4 1.3e-120 430.3
Chy01g01560 . 68 285 HSF AT1G32330 51.8 1.4e-58 224.2
Chy05g00425 . 27 226 HSF AT1G32330 53.6 7.1e-58 221.9
Chy03g01653 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Chy12g00055 CCT,ECH 13 157 HSF AT1G32330 55.9 1.9e-42 170.6
Chy11g00979 . 8 118 HSF AT1G32330 66.1 3.9e-40 162.9
Chy03g01552 . 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Chy07g00142 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Chy01g01560 . 80 297 HSF AT3G02990 53.2 1.1e-58 224.6
Chy05g00425 . 41 226 HSF AT3G02990 55.8 2.0e-57 220.3
Chy03g01653 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Chy12g00055 CCT,ECH 9 157 HSF AT3G02990 53.0 7.7e-41 165.2
Chy11g00979 . 13 106 HSF AT3G02990 72.3 3.6e-38 156.4
Chy01g01560 . 68 284 HSF AT2G26150 56.0 8.7e-66 247.7
Chy06g02159 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Chy05g01447 . 48 247 HSF AT2G26150 52.5 3.2e-52 202.6
Chy12g00055 CCT,ECH 5 155 HSF AT2G26150 53.3 3.3e-41 166.0
Chy11g00979 . 5 118 HSF AT2G26150 60.5 6.5e-37 151.8
Chy04g01969 . 116 361 HSF AT5G03720 56.8 6.3e-71 265.0
Chy11g00979 . 2 140 HSF AT4G18880 59.7 7.5e-45 178.3
Chy06g00340 . 1 436 HSF AT4G13980 51.0 2.4e-103 372.9
Chy11g00979 . 4 140 HSF AT4G13980 58.4 2.5e-39 160.2
Chy01g01560 . 39 404 HSF AT3G22830 51.2 6.1e-95 344.7
Chy03g01653 . 32 241 HSF AT3G22830 55.2 5.6e-64 241.9
Chy06g02159 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Chy12g00055 CCT,ECH 13 157 HSF AT3G22830 52.7 9.0e-38 154.8
Chy01g01560 . 67 379 HSF AT3G51910 50.6 2.1e-70 262.7
Chy05g00425 . 26 323 HSF AT3G51910 52.7 1.3e-69 260.0
Chy03g01653 . 32 224 HSF AT3G51910 57.0 1.4e-55 213.4
Chy03g01653 . 32 231 HSF AT3G63350 53.2 9.9e-52 200.7
Chy11g00979 . 5 140 HSF AT3G63350 57.2 1.1e-37 154.1
Chy06g00930 CCT 17 190 HSF AT4G36990 50.9 6.1e-41 164.9
Chy09g01192 CCT 16 330 HSF AT4G11660 50.7 4.4e-79 292.0
Chy07g00142 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Chy03g01552 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Chy02g01549 . 26 119 HSF AT4G11660 71.3 1.4e-37 154.1
Chy06g02159 . 31 126 HSF AT4G11660 68.8 7.1e-37 151.8
Chy08g00462 . 37 215 HSF AT2G41690 53.1 1.4e-49 193.4
Chy04g01608 . 12 221 HSF AT2G41690 50.5 4.9e-47 184.9
Chy03g01552 . 19 374 HSF AT1G46264 52.0 1.4e-87 320.1
Chy07g00142 . 19 330 HSF AT1G46264 53.8 1.2e-83 307.0
Chy02g01549 . 18 200 HSF AT1G46264 53.3 1.1e-49 194.1
Chy06g02159 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Chy11g00979 . 5 105 HSF AT1G46264 68.3 2.9e-37 152.9
Chy05g00425 . 32 146 HSF AT1G46264 58.3 1.5e-36 150.6
Chy02g01878 CCT 10 292 HSF AT3G24520 51.3 3.2e-65 245.7
Chy01g01560 . 79 319 HSF AT4G17750 51.4 1.0e-59 228.0
Chy03g01653 . 43 243 HSF AT4G17750 52.7 1.1e-58 224.6
Chy05g00425 . 26 226 HSF AT4G17750 54.8 1.2e-57 221.1
Chy05g01447 . 58 251 HSF AT4G17750 50.7 9.9e-47 184.9
Chy12g00055 CCT,ECH 13 157 HSF AT4G17750 55.4 9.6e-42 168.3
Chy11g00979 . 12 114 HSF AT4G17750 68.9 5.3e-40 162.5
Chy03g01552 . 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Chy07g00142 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Chy09g01192 CCT 20 117 HSF AT4G17750 69.4 9.3e-37 151.8
Chy05g00425 . 41 226 HSF AT5G16820 56.7 1.6e-57 220.7
Chy01g01560 . 80 287 HSF AT5G16820 54.2 3.9e-56 216.1
Chy03g01653 . 44 243 HSF AT5G16820 53.6 1.5e-55 214.2
Chy05g01447 . 59 251 HSF AT5G16820 51.0 1.5e-44 177.6
Chy12g00055 CCT,ECH 9 155 HSF AT5G16820 56.7 2.9e-43 173.3
Chy11g00979 . 9 115 HSF AT5G16820 68.2 1.6e-38 157.5
Chy06g02159 . 13 514 HSF AT1G32330 53.4 1.3e-120 430.3
Chy01g01560 . 68 285 HSF AT1G32330 51.8 1.4e-58 224.2
Chy05g00425 . 27 226 HSF AT1G32330 53.6 7.1e-58 221.9
Chy03g01653 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Chy12g00055 CCT,ECH 13 157 HSF AT1G32330 55.9 1.9e-42 170.6
Chy11g00979 . 8 118 HSF AT1G32330 66.1 3.9e-40 162.9
Chy03g01552 . 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Chy07g00142 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Chy01g01560 . 80 297 HSF AT3G02990 53.2 1.1e-58 224.6
Chy05g00425 . 41 226 HSF AT3G02990 55.8 2.0e-57 220.3
Chy03g01653 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Chy12g00055 CCT,ECH 9 157 HSF AT3G02990 53.0 7.7e-41 165.2
Chy11g00979 . 13 106 HSF AT3G02990 72.3 3.6e-38 156.4
Chy01g01560 . 68 284 HSF AT2G26150 56.0 8.7e-66 247.7
Chy06g02159 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Chy05g01447 . 48 247 HSF AT2G26150 52.5 3.2e-52 202.6
Chy12g00055 CCT,ECH 5 155 HSF AT2G26150 53.3 3.3e-41 166.0
Chy11g00979 . 5 118 HSF AT2G26150 60.5 6.5e-37 151.8
Chy04g01969 . 116 361 HSF AT5G03720 56.8 6.3e-71 265.0
Chy11g00979 . 2 140 HSF AT4G18880 59.7 7.5e-45 178.3
Chy06g00340 . 1 436 HSF AT4G13980 51.0 2.4e-103 372.9
Chy11g00979 . 4 140 HSF AT4G13980 58.4 2.5e-39 160.2
Chy01g01560 . 39 404 HSF AT3G22830 51.2 6.1e-95 344.7
Chy03g01653 . 32 241 HSF AT3G22830 55.2 5.6e-64 241.9
Chy06g02159 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Chy12g00055 CCT,ECH 13 157 HSF AT3G22830 52.7 9.0e-38 154.8
Chy01g01560 . 67 379 HSF AT3G51910 50.6 2.1e-70 262.7
Chy05g00425 . 26 323 HSF AT3G51910 52.7 1.3e-69 260.0
Chy03g01653 . 32 224 HSF AT3G51910 57.0 1.4e-55 213.4
Chy03g01653 . 32 231 HSF AT3G63350 53.2 9.9e-52 200.7
Chy11g00979 . 5 140 HSF AT3G63350 57.2 1.1e-37 154.1
Chy06g00930 CCT 17 190 HSF AT4G36990 50.9 6.1e-41 164.9
Chy09g01192 CCT 16 330 HSF AT4G11660 50.7 4.4e-79 292.0
Chy07g00142 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Chy03g01552 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Chy02g01549 . 26 119 HSF AT4G11660 71.3 1.4e-37 154.1
Chy06g02159 . 31 126 HSF AT4G11660 68.8 7.1e-37 151.8
Chy08g00462 . 37 215 HSF AT2G41690 53.1 1.4e-49 193.4
Chy04g01608 . 12 221 HSF AT2G41690 50.5 4.9e-47 184.9
Chy03g01552 . 19 374 HSF AT1G46264 52.0 1.4e-87 320.1
Chy07g00142 . 19 330 HSF AT1G46264 53.8 1.2e-83 307.0
Chy02g01549 . 18 200 HSF AT1G46264 53.3 1.1e-49 194.1
Chy06g02159 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Chy11g00979 . 5 105 HSF AT1G46264 68.3 2.9e-37 152.9
Chy05g00425 . 32 146 HSF AT1G46264 58.3 1.5e-36 150.6
Chy02g01878 CCT 10 292 HSF AT3G24520 51.3 3.2e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18514 PF00447 HSF_DNA-bind 3.70E-32 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01192 Chy_Chr09 FPKM 2.871516 3.277369 1.302476 1.240594 1.6173 1.951084 1.571065 6.368464 5.694588 5.978693