Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01194 ATGGGTATCTCTAACATTTGTTTTCTCTTATTTCTTTCTCTTATTCCTTTCTATTCCCACACCCATGCAGCTACTTTTGAAGTTCACAACAACTGCCCCTTCACTGTTTGGGCTGCGGCCGTACCCGGTGGCGGACATCAACTCAATCAAAACGATGTTTGGATATTTGACGTGAATCCCGGCACTGCTGCCGCACGTGTTTGGGCTCGAACTAATTGCAACTTCGACGATTCTGGTAATGGTGGATGTGAGACTGGCGACTGTGGTGGTCTCCTCCAGTGCCAAGGATATGGCAGTCCGCCCAACACCCTCGCTGAATACGCGTTGAACCAATTCAATAACTTGGACTTCTTCGATATCTCTCTCGTCGATGGGTTCAACGTTCCAATGGAGTTCAGCCCGACATCTGGTGATTGTCGTGGCATCAGGTATGTTAGTAAACTATCAAAAGCTCAAGTTAATGAGTGTGCTACTTTTCAAATCCGCAACAACTGCCCCTTCGCTGTTTGGGCTGCTGCCGTACCGGGTGGCGGACGACGACTTAATCAGAACGATGTTTGGACACTTAACGTGAATCCCGGCACTGCTGCTGCTCGTATTTGGGCTCGAACTAACTGCAACTTCGACGGTTCGGGCCTTGGTAGATGTCAGACCGGCGATTGTGGTGGCCTCCTCCAATGCCAAGCTTACGGTACTCCGCCGAATACCCTTGCCGAATATGCGTTGAATCAATTCAATAACTTAGACTTCTTCGATATCTCTCTCGTCGATGGGTTTAACGTCCCTATGGAGTTCAGTCCAACTTCTGGTGGATGCACTCGTGGCATCAGATGCACTGCGGACATCAACGGGCAGTGCCCGAACGAGCTTAGGGCTCCTGGAGGGTGTAACAACCCGTGTACTGTATTTGGCGGGGATCGATACTGCTGCACGGCCCCGAACAGCAGCTGTGGGCCGACAGATTACTCTAGGTTCTTCAAGAATCGTTGCCCAGATGCATATAGTTACCCAAAAGATGATGCAACCAGCACATTCACTTGCCCTGGTGGAACCAACTATAGGGTTGTTTTCTGCCCTTAA 1080 50.0 MGISNICFLLFLSLIPFYSHTHAATFEVHNNCPFTVWAAAVPGGGHQLNQNDVWIFDVNPGTAAARVWARTNCNFDDSGNGGCETGDCGGLLQCQGYGSPPNTLAEYALNQFNNLDFFDISLVDGFNVPMEFSPTSGDCRGIRYVSKLSKAQVNECATFQIRNNCPFAVWAAAVPGGGRRLNQNDVWTLNVNPGTAAARIWARTNCNFDGSGLGRCQTGDCGGLLQCQAYGTPPNTLAEYALNQFNNLDFFDISLVDGFNVPMEFSPTSGGCTRGIRCTADINGQCPNELRAPGGCNNPCTVFGGDRYCCTAPNSSCGPTDYSRFFKNRCPDAYSYPKDDATSTFTCPGGTNYRVVFCP* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14126169 14130082 + Chy9G169100.1 Chy09g01194 234091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01194 359 ProSiteProfiles Thaumatin family profile. 157 359 IPR001938 -
Chy09g01194 359 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Chy09g01194 359 ProSitePatterns Thaumatin family signature. 212 227 IPR017949 -
Chy09g01194 359 Pfam Thaumatin family 163 359 IPR001938 -
Chy09g01194 359 Pfam Thaumatin family 30 146 IPR001938 -
Chy09g01194 359 PRINTS Pathogenesis-related protein signature 199 210 IPR001938 -
Chy09g01194 359 PRINTS Pathogenesis-related protein signature 158 170 IPR001938 -
Chy09g01194 359 PRINTS Pathogenesis-related protein signature 177 186 IPR001938 -
Chy09g01194 359 PRINTS Pathogenesis-related protein signature 249 265 IPR001938 -
Chy09g01194 359 PRINTS Pathogenesis-related protein signature 349 358 IPR001938 -
Chy09g01194 359 PRINTS Pathogenesis-related protein signature 212 241 IPR001938 -
Chy09g01194 359 ProSiteProfiles Thaumatin family profile. 23 160 IPR001938 -
Chy09g01194 359 SUPERFAMILY Osmotin, thaumatin-like protein 157 359 IPR037176 -
Chy09g01194 359 PANTHER OS03G0233200 PROTEIN 9 151 IPR001938 -
Chy09g01194 359 PANTHER OS03G0233200 PROTEIN 154 359 IPR001938 -
Chy09g01194 359 CDD TLP-P 26 143 - -
Chy09g01194 359 Gene3D Thaumatin 23 156 IPR037176 -
Chy09g01194 359 Gene3D Thaumatin 157 359 IPR037176 -
Chy09g01194 359 SUPERFAMILY Osmotin, thaumatin-like protein 23 143 IPR037176 -
Chy09g01194 359 PANTHER THAUMATIN-LIKE PROTEIN 9 151 - -
Chy09g01194 359 PANTHER THAUMATIN-LIKE PROTEIN 154 359 - -
Chy09g01194 359 CDD TLP-P 159 359 - -
Chy09g01194 359 PIRSF PR5 2 151 IPR001938 -
Chy09g01194 359 PIRSF PR5 141 359 IPR001938 -
Chy09g01194 359 SMART tha2 26 158 IPR001938 -
Chy09g01194 359 SMART tha2 159 359 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01194 - - - csv:101202921 446.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00247 Chy-Chr8:5529244 Chy09g01194 Chy-Chr9:14126169 6.67E-25 dispersed
Chy08g00248 Chy-Chr8:5571673 Chy09g01194 Chy-Chr9:14126169 6.28E-50 dispersed
Chy09g01194 Chy-Chr9:14126169 Chy06g02234 Chy-Chr6:26443876 1.99E-24 dispersed
Chy09g01194 Chy-Chr9:14126169 Chy09g01196 Chy-Chr9:14137601 4.27E-06 proximal
Chy09g01194 Chy-Chr9:14126169 Chy09g01195 Chy-Chr9:14132126 1.06E-34 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g386 . . . . . . . . . . . Cma15g01208 . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01194 . . . . . . . . . . . Cmo15g01273 . . . . . . . . . . . . . . . . . . . . Lsi09g00292 . . Cme09g01730
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01194 Chy_Chr09 FPKM 8.62047 8.365659 8.701891 5.711843 6.392019 5.571128 6.779867 5.155372 6.791652 6.266644