Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01195 ATGAATCCCAACACTTTTAGCTCCTCCATATGGATTGGAAAAAAGTGTAACTTTGACGGGTCTGTTTGCAGCAAGTGTCGAACCGGTGACTGCAGCAACGGCGATGGCAACGACGACAGGTTTCTCCAAAAGAAAGCTTTTGTGGACAAGGGTGGTGGCAGCTTTTTCCGATGGCGATATTATGCCCACGACATAGCCAAATACGTATCGGACAAATTAAATACAACTTTTGAAGTTCGTAACAATTGTCCATTCACTGTTTGGGCTGCTGCCTCTCCCGGCGGCGGCAAAGAACTTAGTTCTGGTCAGGCTTGGAATTTCGATGTGGGACCTGGCACTGCCGGAGCTCGTGTTTGGGCTCGAACCAACTGCAACTTCGATGCCTCTGGACGCGGCCATTGTGAAACCGGAGACTGCGGTGGCCTCCTCTCTTGTCAAGGTTATTAA 447 49.66 MNPNTFSSSIWIGKKCNFDGSVCSKCRTGDCSNGDGNDDRFLQKKAFVDKGGGSFFRWRYYAHDIAKYVSDKLNTTFEVRNNCPFTVWAAASPGGGKELSSGQAWNFDVGPGTAGARVWARTNCNFDASGRGHCETGDCGGLLSCQGY* 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14132126 14134851 + Chy9G169110.1 Chy09g01195 234092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01195 148 PRINTS Pathogenesis-related protein signature 76 88 IPR001938 -
Chy09g01195 148 PRINTS Pathogenesis-related protein signature 95 104 IPR001938 -
Chy09g01195 148 PRINTS Pathogenesis-related protein signature 117 128 IPR001938 -
Chy09g01195 148 PRINTS Pathogenesis-related protein signature 130 148 IPR001938 -
Chy09g01195 148 Pfam Thaumatin family 81 147 IPR001938 -
Chy09g01195 148 Gene3D Thaumatin 74 148 IPR037176 -
Chy09g01195 148 SMART tha2 77 148 IPR001938 -
Chy09g01195 148 PANTHER OS03G0233200 PROTEIN 63 148 IPR001938 -
Chy09g01195 148 ProSitePatterns Thaumatin family signature. 130 145 IPR017949 -
Chy09g01195 148 ProSiteProfiles Thaumatin family profile. 74 148 IPR001938 -
Chy09g01195 148 SUPERFAMILY Osmotin, thaumatin-like protein 75 147 IPR037176 -
Chy09g01195 148 PANTHER PATHOGENESIS-RELATED PROTEIN R MINOR FORM 63 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01195 - - - csv:101218149 131.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01195 Chy-Chr9:14132126 Chy08g00248 Chy-Chr8:5571673 5.68E-25 dispersed
Chy09g01194 Chy-Chr9:14126169 Chy09g01195 Chy-Chr9:14132126 1.06E-34 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g385 . . . . . . . . . . . Cma15g01210 . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01195 . . . . . . . . . . . Cmo15g01274 . . . . . . . . . . . . . . . . . . . . . . . Cme09g01731
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015560 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 1 2 0 1 1 1 0 0 0 0 0 10
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01195 Chy_Chr09 FPKM 10.315789 10.638487 15.131106 13.6324 13.395544 15.719756 13.240568 11.976634 10.110769 8.508564