Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01198 ATGGTAGCCAAGGGTTCGCCGGATTGGCTTCCCTCTGGCTGGACTGTGCAGTATAAAGTTCAGAAAACGGGCCGGAAAATTAGGTTCTATACAAACTTGGAGAATGGCAAAAGCTTTTATTATAAGGATGATGTTATTGGTTATATTAAAAGCACTCAGTCTCAAAAGTCTCAACCAACTTCGAGGGGCGTAAAAACTCAGTCAGGAAATAGTCCAGTGCAACTGACGGTGAAATCAAATGAACACCCTGAATGGTTGCCTGCTGGCTGGAAAGTGGAGTCAAGAACAAGGATGAGTGGTTCAAATGTTGGAGCTGTTTACAAGTGTTACATTGATCCAGTGACGGACAGCAGATTTTATTCAAAGCCAGAGGTATTTCGACATCTCAGAACTGTAAAGAACAAATTATGCACATTGAAAGAGAGAAGGACAAGCAACGGCAAGAAGTCTAGAAGTCGAGTTGTTATTGAACATTATAAAGATGAAGATTTGCCTCCTGGATGGATAAAGGAAATCAAGATCAAAGAAAAGGCAGATGGCATTAGGAAAGACCCGTTTTACATAGATCCAAAATCTGGATACATATTCCGCTCCAAAAAGGAGGTTTTCCGCTATCTCGAGACTGGAGAGATCAGTAGACATGCATTTAAACCAAAGGAAGGGGGCGATGATGATCAAGAGTTGATAAGTGACAAAAAATCACGATCGACTGTTAGAGGACAGAAATTGGAGCAGTCTGCAGCAACCCCGCAATCTCTTGCAGGTGAGGAAATGGCAACAGGGAGACGGTCAGAACGTCCAGGAGTCCATATTCAACAGTTGAAGCAACGCCGGAATGTGTCTTCTGCACGGAAAGATGCTTTAGTTCTTCCTGTTGAAACTGTTGAAGAGATTATTTTGCCTCAAGAAGCGGTCATCAAGGAATCTACTGAAATCAAGGAGTCTACTGAAATCGAAGAAAAAAGTCATAGAAATTTATCATCTCCAAAAGCTGATCATACAGAAGGTAATGAAACTGAAAGAGTATCTTCTGATAATGTAGCAGTTTCAATTTGTGCATCTGAGTCTGACCAAGAGAAAGCGTTGCCAAAAGTTGAAAAGCTAGAAAGTAGTAAAATCGAAATAGTAGTAACTCCAGATAACAGTCCACTTATAAACACTGCATCTAAGTTGGAACATGAGAAGATTGCAATCAGTAATACAATGGAAAGTGGTGTCAATGGGCGAAAGACAAAGACGAGGAAGTCCAAGAAGAAGAAAGGGGTCAACTTGCCTCGGAGGTCTTCAAAACGACTTGCTGGACTTGAACCAGAGTTGGTGCCTAAAGAAGAGGCAAAAGAAGTTCCTCAAGTTTCAAATAGAAATATTTTCACTGAAGTTAGTCCAGATGCTGGCCTAACTGTGAAAGTGGATGCAGATGTTCACAATAAAGATAAAGCATCACAGCAGCTCGATGTGAGGTCGGAAAAAGACAATAAAGACCATATACCTAATCACAAGGACACACCGTTACGTGAAAATCACAAGGACATGTCCTTACGTGAAAATCCTTCCAATAAAAGGAAAACTCCTCTTGCATGCGGCGTCGATGCCCCAGAAGAGAAAATACAGAGAGTGGAAACTGAAAAGAAAGATGATGGAAAGATGGAAGCGCAGCTGAATGTTCCAATTGTTGATTTTTGGTCAGACCCGTGCTTGGAATTTGCAATCAAAACTCTTACGGGCGCGTTGCCGGTGGAGAATGCCACTACCACCAACGAGCCAGTTTCTAATCCTACAGTCGACTTCCTGCAAGGACAGAGTTCAGTAAAAAATGGTCCGGGAAGTCGCATGAATAAGAGAACTCAAGGGAACAAAAGAATCAGGAACAAGAAAGAGCTCACTACTAATAGTCAATCTCCAAGTATTAATGGGCTCAAACCTGAACTGGCATCAAATATAATTTCCTTCGATCAAGCAAACCCAAATCATCATTCAAATGAAGCTGTTCTGGCTTTTAATTTATCAGACGGTAGAATACATGGACAACCAAGTAAGAATGAACAATATAAAACATCATGCGAAATCTTGATACCCAGTGAGCTGCATCATTCCCTGCCCCATGTAGACTCCGAACGATTTAACGGGATCAACGCATGTCATGAGAGCAACAACATGGTGCTCGATGATCCCCATCAAATCCTTCAAACGAATGACCATATGACATCAGAAGTTCCATTATCCTTTCCATTTGGGGATTCCTGGGCAGATCCATGCTTGGATTTTGCATTCAAGACCCTCACAGGTGCAATACCAATAGACGATAGTCTGGAAATTCAAAGCTTCTTTGAGGAACGACTTGAGTCCTCTCGCAGCCAAAAAGACAGTAGCCCAGCACTGCCAGACTTTGGATCCCCTAACCTCTTCCAAAACGATATATCATCTCACTTTGACGGACCCGAAAAATCTGTTTCGGGACAGCATTTGAGTTTAGATCCTCAGCTGACTCTAGGGAACGTGAGCCTACCAAGCTGCAGTGGATTCACTTCTCAACAGCAGTCTTCAGTGGATAGAAACAGATCTTTTAGAGGAAGGTGA 2577 42.22 MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLENGKSFYYKDDVIGYIKSTQSQKSQPTSRGVKTQSGNSPVQLTVKSNEHPEWLPAGWKVESRTRMSGSNVGAVYKCYIDPVTDSRFYSKPEVFRHLRTVKNKLCTLKERRTSNGKKSRSRVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPFYIDPKSGYIFRSKKEVFRYLETGEISRHAFKPKEGGDDDQELISDKKSRSTVRGQKLEQSAATPQSLAGEEMATGRRSERPGVHIQQLKQRRNVSSARKDALVLPVETVEEIILPQEAVIKESTEIKESTEIEEKSHRNLSSPKADHTEGNETERVSSDNVAVSICASESDQEKALPKVEKLESSKIEIVVTPDNSPLINTASKLEHEKIAISNTMESGVNGRKTKTRKSKKKKGVNLPRRSSKRLAGLEPELVPKEEAKEVPQVSNRNIFTEVSPDAGLTVKVDADVHNKDKASQQLDVRSEKDNKDHIPNHKDTPLRENHKDMSLRENPSNKRKTPLACGVDAPEEKIQRVETEKKDDGKMEAQLNVPIVDFWSDPCLEFAIKTLTGALPVENATTTNEPVSNPTVDFLQGQSSVKNGPGSRMNKRTQGNKRIRNKKELTTNSQSPSINGLKPELASNIISFDQANPNHHSNEAVLAFNLSDGRIHGQPSKNEQYKTSCEILIPSELHHSLPHVDSERFNGINACHESNNMVLDDPHQILQTNDHMTSEVPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSPALPDFGSPNLFQNDISSHFDGPEKSVSGQHLSLDPQLTLGNVSLPSCSGFTSQQQSSVDRNRSFRGR* 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14148738 14157481 - Chy9G169140.1 Chy09g01198 234095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01198 858 MobiDBLite consensus disorder prediction 52 73 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 803 823 - -
Chy09g01198 858 Gene3D - 141 256 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 215 239 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 838 858 - -
Chy09g01198 858 Gene3D - 81 140 - -
Chy09g01198 858 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 154 223 IPR001739 GO:0003677
Chy09g01198 858 MobiDBLite consensus disorder prediction 311 340 - -
Chy09g01198 858 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 71 IPR001739 GO:0003677
Chy09g01198 858 MobiDBLite consensus disorder prediction 584 614 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 401 437 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 215 280 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 838 852 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 584 638 - -
Chy09g01198 858 Pfam Methyl-CpG binding domain 81 134 IPR001739 GO:0003677
Chy09g01198 858 Pfam Methyl-CpG binding domain 162 209 IPR001739 GO:0003677
Chy09g01198 858 SUPERFAMILY DNA-binding domain 82 134 IPR016177 GO:0003677
Chy09g01198 858 SUPERFAMILY DNA-binding domain 158 211 IPR016177 GO:0003677
Chy09g01198 858 PANTHER OS04G0193200 PROTEIN 6 850 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 311 347 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 411 426 - -
Chy09g01198 858 MobiDBLite consensus disorder prediction 473 526 - -
Chy09g01198 858 Gene3D - 5 78 - -
Chy09g01198 858 PANTHER OS04G0193200 PROTEIN 6 850 IPR038945 -
Chy09g01198 858 MobiDBLite consensus disorder prediction 473 517 - -
Chy09g01198 858 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 76 149 IPR001739 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01198 - - - csv:101223188 1634.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g00936 Chy09g01198 CCT
Chy06g00936 Chy09g01198 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00198 Chy-Chr12:2390586 Chy09g01198 Chy-Chr9:14148738 3.44E-11 transposed
Chy06g00936 Chy-Chr6:6871677 Chy09g01198 Chy-Chr9:14148738 1.73E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g651 . . Bda05g00063 . Bpe03g00292 . . . Cmo16g00136 Cmo18g01264 . . . . Sed01g3910 . Cpe14g00111 Bhi01g01334 Tan01g0265 Cmetu09g1530 . Hepe07g0168 Mch10g0165 . Cla01g00286 Cam01g0298 Cec01g0291 Cco01g0304 Clacu01g0297 Cmu01g0284 Cre09g2225 . . . . Lsi05g01239 Csa05g00308 Chy09g01198 . Blo07g00416 . . . . . . . . . . Cma16g00131 Cma18g01241 . Car18g01146 Cpe09g00096 . Bhi12g00219 . . . . . . Cla05g00869 Cam05g0957 Cec05g0962 Cco05g0962 Clacu05g0943 Cmu05g0901 Cre05g0985 . Csa03g01700 Chy06g00936 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010700 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01198 Chy_Chr09 FPKM 31.532507 29.492426 56.801533 59.053143 29.200016 30.169333 30.882734 49.943935 45.421848 51.075871