Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01203 ATGTTTCAGTTTCTGGCTATTCTTGTCATAATATTTGGGATATGGATGGGCACCCACCACGACGGTTGTCGAAAATCTCTCACACTTCCTGTCATGGGACTTGGTGGATTCATCTTTGTGGTGTCCATAGTTGGTTTCTTGGGTGCCCTTAAGAACAATTCGATATTGCTGTGGATTTATCTGATCATGTTGTGCATCACGTTGGTGGGGATTCTCGTGTTTACAGTGTTGGCGTTTATTGTTACAAATAATGGATCGGGACATGATGTTGCTGGCTTGAGGTATAAGGAGTATCAACTACAAGACTATAGTACGTGGTTTCTAAAACAGCTTAACAATACTGAAAATTGGATGCGTCTGAAAAGCTGTCTCGTCAAATCCGAGGATTGCAACAATCTTTCAAAAAGATACAAGACTCTCAAGCAGTACAAATTGGCAAAGCTGACGCCCATGGAAGCGGGTTGTTGTAGACCCCCATCTGAATGTGGTTATCCTGCTGTTAATGCATCATACTATGACTTGAGCTTTCATCCTGTCAATCCAAACCATGATTGCAAAGTATACAAGAATTCCAAGGCGGTCAAGTGTTACGATTGTGATTCGTGCAAGGCCGGAGTCGCACAGTACATGAAAACTGAATGGCGATTGGTTGCTATCTTCAACGTCATTCTATTTGTTGTCTTGCTGATAATCTACTTAGTCGGATGCTGCGCTCGGCGAAAAGCTGCAAGAAATCGATCTAAAGTGACTACTATTCGTTCCGGTATCGAACTGTATTTCGACCATGAACCGTTATTTGCCTACACAGAATGCTGA 816 42.52 MFQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHDVAGLRYKEYQLQDYSTWFLKQLNNTENWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNPNHDCKVYKNSKAVKCYDCDSCKAGVAQYMKTEWRLVAIFNVILFVVLLIIYLVGCCARRKAARNRSKVTTIRSGIELYFDHEPLFAYTEC* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14183748 14186466 + Chy9G169190.1 Chy09g01203 234100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01203 271 PANTHER TETRASPANIN-10 4 248 - -
Chy09g01203 271 Pfam Tetraspanin family 4 238 IPR018499 GO:0016021
Chy09g01203 271 PANTHER TETRASPANIN-8-RELATED 4 248 IPR044991 GO:0009734|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01203 - - - csv:101222956 489.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01203 Chy-Chr9:14183748 Chy02g02165 Chy-Chr2:25850481 1.28E-55 dispersed
Chy09g01203 Chy-Chr9:14183748 Chy12g01466 Chy-Chr12:18608590 2.72E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g360 . . . . . . . Bma14g00589 . . Cma02g01473 Cma15g01214 Car02g01234 . . . Cpe05g00316 . . . . . . . . . . . . . . Cone8ag0319 . . . . . Chy09g01203 . Blo03g00366 . . . . Bpe11g00678 . . . Cmo02g01508 Cmo15g01278 . . . . . Cpe13g00166 Bhi12g00222 . . Lac11g2117 Hepe06g1566 . Lcy12g1674 Cla01g00284 Cam01g0295 Cec01g0288 Cco01g0301 Clacu01g0295 Cmu01g0281 Cre09g2228 Lsi09g00284 . . Cme09g01740
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010015 0 1 1 1 1 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 0 1 1 1 1 2 0 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01203 Chy_Chr09 FPKM 40.402817 42.804962 42.033604 45.753262 28.40889 24.033127 26.185917 26.699142 26.988108 29.840328