Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01210 ATGGAATCTTTTACTTCTCTTGTGGTGTTTCTCTGTTTGATTTTGGGGTTTCTTTTTGAGGCTTGTGATTCTATTTCTTCCAATGAAGTCATGGCTCTTGGGGCCTTCAGGTCAGAAGTATTTGAAGATCCATATCAAGTCTTCTCCAACTGGAACAGCCTTCAACCAGATCCTTGTTTATGGTCTGGCATTTCATGTTCTCCAACTAGAGACCATGTTATAAAGATTAACATTTCATATTCTGCAATAAAAGGGTTTCTTTCAGGAGATTTGGGTCAACTTAGCTTCTTGGAAGAATTAATTTTGCATGGGAATAAGCTGCATGGTCCAGTTCCCAAGGAGTTAGGCTACTTAAAAAACCTCAGAATCTTGGACTTGGGGATGAATCAATTAACAGGTCCAATTCCTTCAGAATTTGGGAATTTAACCAAACTTGTGAAAATAAACCTACAGTCTAATGAGTTCACTGGTAAGCTGCCTCCTGAGTTGGGAAATTTGAAATACCTTGAGGAACTAAGGCTGGATAGAAATAAGCTTGGAGGAGCTGTTGGCCATTCAGATCATACTGAACTGTATGCAACAAAAACGAACTTGACTGGGTTCTGTGGCTCATCTCAGCTAAGAGTTGCCGATTTTTCGTATAACTTTTTTGTTGGGAGCATACCAAAGTGTTTGGAGCATCTTCCAGGGTCAAGTTTCCAAGGGAACTGCCTCCATAAAATTAACTCCAAACAACGTCCTTCAGCACAATGTGAACCTGCTGTGACTAAGAGCCATCCGGGAACCAATGGGCAGAACCATCATCAAACAACGTCAAAACCTATCTGGCTTTTGGCCCTTGAGATAGTAACAGGAACTCTGGTGGGTTCTCTCTTCCTTGTTGCTGTTCTCACTGCAGTCCAGAAGTTCAATCGAAAGTCCTCCATGATATTGCCATGGAAGAAAGCTGGAAGTAGGAAGTACTACGCTCCAGTATATGTAGATCCTGAGATTTTAAAGGATGTAACGAGATTTAGTCGACAAGAACTTGAATTAGCTTGTGAAGACTTCAGCAACATAATTGGCTCCTCTCGAGACAGTTTGGTATACAAGGGCACCATGAAAACTGGACCCGAGATTGCGGTTATCTCAATGAGCATGAAAGAAGAGCAATGGACAGGATACCTTGAACTCTATTTTCAGACAGAGGTAGCAGATTTGTCACGAATTAACCACGAGAATACGGGGAAATTACTGGGTTATTGCAGAGAGAGTACTCCATTTACAAGGATGCTAGTTTTTGAGTATGCATCAAATGGCACATTATATGAGCATCTACATTATGGAGAAGCATGTCAATTATCTTGGACAAGACGCATGAAGATTATTTTAGGCATTGCTCGGGGACTTAAGTATCTTCACACAGAACTCCAACCTCCATTCACCATATCCGAGCTGAATTCCAATGCTGTATATCTCACAGATGATTTTTTTCCGAAGCTAATAGACTTTGAAAGTTGGAAGACTATTCTTTCACGATCGGAAAAGAACTCAGGATCTATAGCCAGCCAAGGTGCAATATGTGTTCTTCCAAACTCTCTAGAAGCACGACATCTCGACGTGCAAGGTAACATCTATGCATTCGGTGTCCTTCTACTCGAAATAATCAGTGGGAGGCCTCTGTACTGCAAAGACAAAGGAAACTTGGTAGATTGGGCCAAGGACTATATCGAAATGCCAGAAGTGATGTCATACCTTGTTGATCCTGAACTGAAGCATTTTAGATATGAAGACCTTGAAGTAATATGCGAGGTGGCGAACCTTTGCATCCGTCAGCAGCCAACAAAACCGGTATCAATGAAGGAGCTCTGTACCATGTTAGAAACTAGAATTGATACCTCTGTTGCCATTGAGTTTAAGGCTTCTTCTTTGGCATGGGCAGAGCTTGCACTCTCATAA 1938 41.59 MESFTSLVVFLCLILGFLFEACDSISSNEVMALGAFRSEVFEDPYQVFSNWNSLQPDPCLWSGISCSPTRDHVIKINISYSAIKGFLSGDLGQLSFLEELILHGNKLHGPVPKELGYLKNLRILDLGMNQLTGPIPSEFGNLTKLVKINLQSNEFTGKLPPELGNLKYLEELRLDRNKLGGAVGHSDHTELYATKTNLTGFCGSSQLRVADFSYNFFVGSIPKCLEHLPGSSFQGNCLHKINSKQRPSAQCEPAVTKSHPGTNGQNHHQTTSKPIWLLALEIVTGTLVGSLFLVAVLTAVQKFNRKSSMILPWKKAGSRKYYAPVYVDPEILKDVTRFSRQELELACEDFSNIIGSSRDSLVYKGTMKTGPEIAVISMSMKEEQWTGYLELYFQTEVADLSRINHENTGKLLGYCRESTPFTRMLVFEYASNGTLYEHLHYGEACQLSWTRRMKIILGIARGLKYLHTELQPPFTISELNSNAVYLTDDFFPKLIDFESWKTILSRSEKNSGSIASQGAICVLPNSLEARHLDVQGNIYAFGVLLLEIISGRPLYCKDKGNLVDWAKDYIEMPEVMSYLVDPELKHFRYEDLEVICEVANLCIRQQPTKPVSMKELCTMLETRIDTSVAIEFKASSLAWAELALS* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14237132 14241195 + Chy9G169260.1 Chy09g01210 234107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01210 645 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g01210 645 Pfam Protein tyrosine and serine/threonine kinase 351 566 IPR001245 GO:0004672|GO:0006468
Chy09g01210 645 PANTHER PROTEIN MALE DISCOVERER 2 7 645 - -
Chy09g01210 645 SUPERFAMILY Protein kinase-like (PK-like) 327 621 IPR011009 -
Chy09g01210 645 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 645 - -
Chy09g01210 645 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Chy09g01210 645 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Chy09g01210 645 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Chy09g01210 645 SUPERFAMILY L domain-like 28 229 - -
Chy09g01210 645 Gene3D Phosphorylase Kinase; domain 1 327 429 - -
Chy09g01210 645 Gene3D Ribonuclease Inhibitor 141 255 IPR032675 -
Chy09g01210 645 Gene3D Transferase(Phosphotransferase) domain 1 430 635 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01210 - - - csv:101221772 1258.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy07g01211 Chy09g01210 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01211 Chy-Chr7:16928563 Chy09g01210 Chy-Chr9:14237132 0 dispersed
Chy09g01210 Chy-Chr9:14237132 Chy11g01373 Chy-Chr11:20046737 5.77E-16 dispersed
Chy09g01210 Chy-Chr9:14237132 Chy10g00389 Chy-Chr10:9513765 1.10E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71482 PF07714 PK_Tyr_Ser-Thr 6.80E-18 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01210 Chy_Chr09 FPKM 18.416195 21.247484 26.020866 25.904789 27.159576 21.278894 28.61875 28.326021 29.08124 30.247786