Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01212 ATGAACGGAGTAACGATGATGTTGATGCCGATGGCAAAGAAATTGAATCCTTACAACGCAGAGGTGATTTCAGTCAGAATAGCATCTGTTAACATAGACAACTTAATAATTGCTTTTGCTGTTAAAATGAACGTGGAGGGTCAAAATAAGAAGAAAGAGTATGCTGCTGATATTTCCTCCATAAAGGAAGCTCGGATACGTATTCGACCTTTCATCCATCAAACCCCAGTTTTTTCATCTGAAACTATCAATGCTGCTTCAAGAAAACAACTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCTTTTAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGAGGGCGAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGAATCCCTGCATATATAGTTATACCAGAAAATGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTACGGTGGTCAGATTATTTGGAGCAAAGGCACAATAAAGTCAAGGGAATCGGTTGCTGCGAGGGTTATGAAAGAAACTGGTGCACTTCTCATACACTCATATAATGATGGGCGCATAATAAGTGGGCAAGGTACCATCTCGTTGGAGCTTCTGGAACAAGTCCCACAATTAGACACTTTAATCGTTCCCATAAGTGGTGGTGGTTTGATATCAGGAATTTCAGTGGCTGCAAAGGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCAGCTGGTAAGATAGTAACATTGCCAGAGACCACCACCATAGCCGATGGTCTTCGAGCTTTTCTCGGCGACCTGACCTGGCCAATAGTAAGAGATTTGGTGGATGATGTAATAACTGTGGAGGACACTGAGATAGTTGAAGCAATGAGACTTTGTCTTGAAATTCTTAAAGTTGTTGTGGAACCAAGTGGGGCAATAGGTCTGGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAGTATTGCAACTCCATTGGCATTATACTTTCTGGAGGGTTGGAGATTTTTTCTGAACTTTTTTCAGGTGTGCCGTTTCTTGCTGTTAAAATGAACGTGGAGAATCCAAATAAGAAGAAAGAGTATGCTGCTGATATTTCCTCCATAAAGGAAGCTCGGATACGTATTCGACCTTTCATCCATCAAACCCCAGTTTTTTCATCTGAAACTATCAATGCTGCTTCAGGAAAACAACTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCTTTTAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGAGGGCGAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCTGCTTTGTCTTTGGCTGCAAAACTGCGAGGAATCCCTGCATATATAGTTATACCAGAAAATGCTCCAAAATGTAAAGTTGAAAATGTGGTACGTTATGGTGGTCAGATTATTTGGAGCAAAAGCGCAATACAGTCAAGGGAATCGGTTGCTGCGAGGGTTATGCAAGAAACTGGTGCACTTCTCATACACCCATATAATGATGGGCGCATAATAAGTGGGCAAGGTACCATCTCGTTGGAGCTTCTGGAACAAGTCCCACAATTAGACACTTTAATCGTTCCCATAAGTGGTGGTGGTTTGATATCAGGAATTTCAGTGGCTGCAAAGGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCAGCTGGTAAGATAGTAACACTGCCAGAGACCACCACCATAGCTGATGGTCTTCGAGCTTTTCTCGGCGAACTGACCTGGCCAATAGTAAGAGATTTGGTGGATGATGTAATAACTGTGGAGGACACTGAGATAGTTGAAGCAATGAGACTTTGTCTTGAAATTCTTAAAGTTGTTGTGGAACCAAGTGGGGCAATAGGTCTTGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAGTATTGCAACTCCATTGGCATTATACTTTCTGGAGGTAATGTTGATCTTGGCATGCTTTGGAATTCTTACAAAAAATGA 2139 42.5 MNGVTMMLMPMAKKLNPYNAEVISVRIASVNIDNLIIAFAVKMNVEGQNKKKEYAADISSIKEARIRIRPFIHQTPVFSSETINAASRKQLFFKCECFQKGGAFKFRGACNAIYSLDEGEAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQIIWSKGTIKSRESVAARVMKETGALLIHSYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVTLPETTTIADGLRAFLGDLTWPIVRDLVDDVITVEDTEIVEAMRLCLEILKVVVEPSGAIGLAAVLSDSFKQNPSWKYCNSIGIILSGGLEIFSELFSGVPFLAVKMNVENPNKKKEYAADISSIKEARIRIRPFIHQTPVFSSETINAASGKQLFFKCECFQKGGAFKFRGACNAIYSLDEGEAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVVRYGGQIIWSKSAIQSRESVAARVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVTLPETTTIADGLRAFLGELTWPIVRDLVDDVITVEDTEIVEAMRLCLEILKVVVEPSGAIGLAAVLSDSFKQNPSWKYCNSIGIILSGGNVDLGMLWNSYKK* 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14246759 14259386 - Chy9G169280.1 Chy09g01212 234109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01212 712 CDD Thr-dehyd 395 702 - -
Chy09g01212 712 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 96 109 IPR000634 GO:0006520|GO:0030170
Chy09g01212 712 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 411 712 - -
Chy09g01212 712 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 395 705 IPR036052 -
Chy09g01212 712 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 58 345 IPR036052 -
Chy09g01212 712 PANTHER - 75 362 - -
Chy09g01212 712 PANTHER - 411 712 - -
Chy09g01212 712 PANTHER - 51 86 - -
Chy09g01212 712 Gene3D - 404 702 IPR036052 -
Chy09g01212 712 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 75 362 - -
Chy09g01212 712 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 51 86 - -
Chy09g01212 712 Pfam Pyridoxal-phosphate dependent enzyme 69 342 IPR001926 -
Chy09g01212 712 Pfam Pyridoxal-phosphate dependent enzyme 406 679 IPR001926 -
Chy09g01212 712 Gene3D - 67 362 IPR036052 -
Chy09g01212 712 CDD Thr-dehyd 58 362 - -
Chy09g01212 712 PANTHER - 388 425 - -
Chy09g01212 712 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 388 425 - -
Chy09g01212 712 Gene3D - 441 537 IPR036052 -
Chy09g01212 712 Gene3D - 104 200 IPR036052 -
Chy09g01212 712 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 433 446 IPR000634 GO:0006520|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01212 K12235 SRR; serine racemase [EC:5.1.1.18] - csv:101217208 633.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00895 Chy-Chr8:16374665 Chy09g01212 Chy-Chr9:14246759 5.58E-35 dispersed
Chy08g00896 Chy-Chr8:16386530 Chy09g01212 Chy-Chr9:14246759 6.72E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g337 . Blo03g00210 Bda06g00086 . . Bpe07g00113 . . . . . . . . . . Cpe05g00324 . . . . . . . . . . . . . . . . . Cone9ag0772 . Csa05g00294 Chy09g01212 . . . . . . . . Bma12g00086 . . . . . . . . . Bhi12g00237 . . . . . . . . . . . . . Lsi09g00273 . . Cme09g01749
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01212 Chy_Chr09 FPKM 6.574879 4.47635 9.498357 8.892114 7.095215 6.68835 10.011463 4.622962 4.315564 6.060002