Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01217 ATGGCTACTCAAGCTTCAAATCACCCGGAATCCATTTACGACTTCACCGTCAAAGATGCTATGGGAAATGATATCAATCTTAGTATATACAAGGGTAAAGTCTTACTCATTGTTAACGTTGCTTCCAGATGTGGGATGACGAATTCAAACTATGTGGAGTTGAACCAACTATACGAGAAATACAAAGAACACGGTTTGGAGATTTTGGCATTTCCATGTAATCAGTTTGGTGACGAGGAACCAGGAAGTAATGATGAGATCAAAGATTTTGTCTGCAGTCGTTTCAAATCAGAATTTCCAATTTTTGACAAGATTGAAGTAAATGGAAACAATTCTGCTCCACTCTACAAATTCCTAAAACTGGGCAAATGGGGGATATTTGGGGACGATATACAGTGGAATTTTGCCAAATTTCTCATTGATAAGAATGGGAATGTAGTTGATCGTTATTACCCAACAACACCACCTCTCAGCATAGAGATGGAAAATTCCTGCTTAGACAAACATGCATCTTCCTCCTGCTACAGCTGCCCAACAATCTTACCCTCCAAAATACCAAAAACTCTGTCCAATAAATTCAACATTGACTTGAGAAACTTGAAATGA 606 38.28 MATQASNHPESIYDFTVKDAMGNDINLSIYKGKVLLIVNVASRCGMTNSNYVELNQLYEKYKEHGLEILAFPCNQFGDEEPGSNDEIKDFVCSRFKSEFPIFDKIEVNGNNSAPLYKFLKLGKWGIFGDDIQWNFAKFLIDKNGNVVDRYYPTTPPLSIEMENSCLDKHASSSCYSCPTILPSKIPKTLSNKFNIDLRNLK* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14283722 14286481 + Chy9G169330.1 Chy09g01217 234114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01217 201 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004602|GO:0006979
Chy09g01217 201 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004602|GO:0006979
Chy09g01217 201 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004602|GO:0006979
Chy09g01217 201 ProSiteProfiles Glutathione peroxidase profile. 2 173 IPR000889 GO:0004602|GO:0006979
Chy09g01217 201 PANTHER GLUTATHIONE PEROXIDASE 8-RELATED 1 162 - -
Chy09g01217 201 ProSiteProfiles Thioredoxin domain profile. 6 171 IPR013766 -
Chy09g01217 201 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Chy09g01217 201 Gene3D Glutaredoxin 1 166 - -
Chy09g01217 201 CDD GSH_Peroxidase 11 160 IPR000889 GO:0004602|GO:0006979
Chy09g01217 201 ProSitePatterns Glutathione peroxidases signature 2. 69 76 IPR029760 -
Chy09g01217 201 SUPERFAMILY Thioredoxin-like 11 160 IPR036249 -
Chy09g01217 201 PANTHER GLUTATHIONE PEROXIDASE 1 162 IPR000889 GO:0004602|GO:0006979
Chy09g01217 201 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004602|GO:0006979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01217 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - csv:101220211 333.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01216 Chy-Chr9:14280128 Chy09g01217 Chy-Chr9:14283722 1.45E-87 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g330 . . . . . . Bma07g01647 . . . Cma02g01460 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0773 Cone9ag0779 . Csa05g00289 Chy09g01217 . . Blo19g00321 . Bda09g00042 . . . Bma12g00393 . Cmo02g01495 . . . . . . . Bhi12g00245 . . . . . . . . . . . . . Lsi09g00266 . . Cme09g01754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01217 Chy_Chr09 FPKM 67.041985 77.010582 68.505516 59.738579 69.578697 51.146072 73.417076 71.245003 79.873047 82.597733