Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g01218 | ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGGGTTGGTGGCACTGGATCGGGGCTTCCTACTGCTGGATCACATGCCTCCCCTGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACGTATACTGTTGAGCCATCACATTCGAACTATCTTCGTGGGATGGGTATCAATGTCTCAGCGGGAGTGAACTCTGGTGAACCTGTAAAGAAGAAGAGAGGGAGACCCCGGAAATATGCCCCAGATGGGCAGGTCTCGTTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCAGGTTCGAATTCATCGACCCCCAGACGACGACGGGGGCGGCCACCTGGTTCTGGGAGGAAACAACAATTAGCTCTCCTTGGTGATTGGATGAACAATTCGGCTGGATTAGCCTTTGCCCCACATGTTATTCACGTTGGAGCTGGAGAAGACATTGTAGCAAAAGTATTGTCATTCGCACAGCAGAGGCCAAGGGCTGTTTGTGTCTTGTCTGGCAATGGCACTGTTTCTTCTGTAACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATATTGTGCTTGTCTGGTTCTTACTTGGTGGCTGAAGATGGCGGTCCTCGAAGTAGGACGGGTGGTATTAGTGTTTCCCTTGCCAGTCCTGATGGTCATGTTATTGGTGGCGGCGTTGCTGTTCTTATGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTCCAAAGATAAAAAACAAGCAGGTGGCTGGTCTGAAAAGCAATGATGGTTCTGGACATGAGCACCACGATAATTTGGTTTCGCCCACGAGTGCCCCATCTACTCAAACCTACAATCCATCTTCAATGGGTGTTTGGCCTGGTTCCCGTTCGGTCGATGTGAGAAACCCTCGTACTGGAATTGACTTGACGCGAGGATGA | 1032 | 50.39 | MDGREGMALSGGSASYYIHRGGGVGGTGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYTVEPSHSNYLRGMGINVSAGVNSGEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRAVCVLSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRSRTGGISVSLASPDGHVIGGGVAVLMAAGPVQVVVCSFVYGPKIKNKQVAGLKSNDGSGHEHHDNLVSPTSAPSTQTYNPSSMGVWPGSRSVDVRNPRTGIDLTRG* | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 14286633 | 14291761 | - | Chy9G169340.1 | Chy09g01218 | 234115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g01218 | 343 | MobiDBLite | consensus disorder prediction | 301 | 323 | - | - | |
| Chy09g01218 | 343 | Gene3D | - | 163 | 290 | - | - | |
| Chy09g01218 | 343 | MobiDBLite | consensus disorder prediction | 288 | 343 | - | - | |
| Chy09g01218 | 343 | ProSiteProfiles | PPC domain profile profile. | 158 | 295 | IPR005175 | - | |
| Chy09g01218 | 343 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 1 | 343 | IPR039605 | GO:0003680 | |
| Chy09g01218 | 343 | MobiDBLite | consensus disorder prediction | 112 | 133 | - | - | |
| Chy09g01218 | 343 | MobiDBLite | consensus disorder prediction | 85 | 143 | - | - | |
| Chy09g01218 | 343 | CDD | DUF296 | 163 | 275 | IPR005175 | - | |
| Chy09g01218 | 343 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 163 | 276 | IPR005175 | - | |
| Chy09g01218 | 343 | PANTHER | AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN | 1 | 343 | - | - | |
| Chy09g01218 | 343 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 161 | 276 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy09g01218 | Chy-Chr9:14286633 | Chy10g00178 | Chy-Chr10:4339040 | 4.62E-50 | dispersed | |
| Chy11g00873 | Chy-Chr11:12166694 | Chy09g01218 | Chy-Chr9:14286633 | 4.04E-23 | dispersed | |
| Chy11g01635 | Chy-Chr11:22872895 | Chy09g01218 | Chy-Chr9:14286633 | 7.99E-86 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g01218 | - | - | csv:101219973 | 661.759 |