Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01229 ATGTGTCAAGGAAACGGTGAAAGATTTGTGAAAATGAACAAACAGAATAAGCCTTGTGTAAGCAATCAGCCATCAATATATTATTGGTGGAGACCAGATGAGGGCATATCTTCTGAGCTGGCTGATTTTGTCCTTGAAAATGGCACCTCCAACACTTGTTACGCCAAACAAATTAAGGATGGCAGTACTGTAAATAAACCCAAGTCTTCTGAGATATTGAGCACAACTCAGGTCATTTCAATTTTTGGCCAAGTATTGAATCTTGCTAGTCGTCCTTTTACCTTTTTCCAACCAAAGAGGGTCTTGAACCGAGACAATGATGATTCCGTTGAGGTTACCTTCAATAGTGTGGTTGAAGTTGATGGCAAAACAGTTACCTCACCTGAAATTAAAGACTTCTGTGTTGATTTAAGGACCGATGGCCAATGTTCTCCTATGGTGCAGCCTACATTGGGTTTGAATTGTTTGACAGTAACCCAGAAGATTTCTTTGTTAGAACCTTGTAATTATCATTCCATGTCATCATTTTGGAATCTACTAAATGGTGGTAGTGGCATGCCAGCTAATTCCTGGACAGGAAAACGCCTTACTAGTGTACGAATCTTGCACGATATGGGGAAGATATATGAATGGATGAACCGTGTAAGTCATACTGAAACATGCTACCCTTACCCTATGAAAGTTGCTAATACTGGAAACATGGAAGCCAATGTATTACAGGCTAGAGGTGGTCTTAATGAAGCAGGGGACTGCGTTTCAGGAGATTCAAATCTCCTTGTTCACAACTTGATTAGTGAAACTTCAAAGAAGGCTCCTATATTCCAATCAACCAATGTATCATCTTTGTTCATCCGAAAGTTGGAGATAAAAATGATTGAAAATGTTTATATGGCCTCACGTATCCTTATGTTTGTTCAAGATAACAAGGCAGATGGCAGTATTCTAGAAAGCCACAATCCAGATATTTTGGCAGCTCATTCAGTACCTTCCAAAGATGGTGCATTAGACAATTTAGACTACGGGCAGAAGACTAGTAGCAGTGAACAACGTGAGAACATAACCAAAAAGTCCGATAAGCTCATTGTTGAAAATGAGTACAACAGAGAGGATTCGTCATTGACCCGTGAAAGATCTTGTTACAATATTGGTAAACAAGAACATGCCTTTGCCGGGGCATTAGCTGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACAATCAAAACAGTGGTTCAATCTTATCATGCAGAACAGAAGTCTCTCAGTTATATTGGAAAATCAATTGTCACTGATCGAGGTTTAAGTGGACTTTATCGTGGAATCTCCACCAACATTGCTTCTTCAGCTCCAATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCAATTCTCCAAGAGGTGCAACAGGAACTACATATGGCCCCTTACTGCGGATGTTTCATGGAAAATGAAACTTGTGGGTCTGAGTACCGCTCTATTGTCCACTGCGTGGCTGGTGGTTGTGCAAGTATTGCTACATCTTTTCTTTTTACCCCAAGTGAGCGTATAAAACAGCAGATGCAAGTTAGTGCACACTACCATAACTGCTGGAATGCCTTTGTTGGTGTTGTTGCGAAGGGTGGACTGCGTGGATTATATACCGGGTGGGGAGCAGTTCTTTGCAGAAATGTACCACACTCGATTATCAAGTTCTATACATATGAAAGTTTGAAAGGACTGATGAAATCTAATGCTCAACAAACTACTTCACAAACGTTAGTTTGTGGAGGAGTAGCTGGATCTACTGCCGCCTTATTTACCACTCCTTTTGATGTTGTAAAGACCAGATTACAAACACAAATACCAGGATCTTTGAGCCCATATAAAAGTGTAATTCAAGCACTCTATGAAATAGGCAAAAAAGAAGGCCTGCAAGGTCTCTATAGGGGGTTGACTCCAAGACTAGTTATGTACATGTCTCAAGGTGCAATCTTCTTCACCTCTTATGAATTTTTGAAGAGACTTTTTTCTCTTGAGGTGCCTCGACATGATACTGCAAGAGTCCAACACCGAGTGGATGAGAAACTCGAAAGATGA 2097 40.39 MCQGNGERFVKMNKQNKPCVSNQPSIYYWWRPDEGISSELADFVLENGTSNTCYAKQIKDGSTVNKPKSSEILSTTQVISIFGQVLNLASRPFTFFQPKRVLNRDNDDSVEVTFNSVVEVDGKTVTSPEIKDFCVDLRTDGQCSPMVQPTLGLNCLTVTQKISLLEPCNYHSMSSFWNLLNGGSGMPANSWTGKRLTSVRILHDMGKIYEWMNRVSHTETCYPYPMKVANTGNMEANVLQARGGLNEAGDCVSGDSNLLVHNLISETSKKAPIFQSTNVSSLFIRKLEIKMIENVYMASRILMFVQDNKADGSILESHNPDILAAHSVPSKDGALDNLDYGQKTSSSEQRENITKKSDKLIVENEYNREDSSLTRERSCYNIGKQEHAFAGALAGVFVSLCLHPVDTIKTVVQSYHAEQKSLSYIGKSIVTDRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPILQEVQQELHMAPYCGCFMENETCGSEYRSIVHCVAGGCASIATSFLFTPSERIKQQMQVSAHYHNCWNAFVGVVAKGGLRGLYTGWGAVLCRNVPHSIIKFYTYESLKGLMKSNAQQTTSQTLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEIGKKEGLQGLYRGLTPRLVMYMSQGAIFFTSYEFLKRLFSLEVPRHDTARVQHRVDEKLER* 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14371808 14375931 - Chy9G169450.1 Chy09g01229 234126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01229 698 ProSiteProfiles Solute carrier (Solcar) repeat profile. 382 466 IPR018108 -
Chy09g01229 698 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 495 692 - -
Chy09g01229 698 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 495 692 - -
Chy09g01229 698 Gene3D Mitochondrial carrier domain 495 692 IPR023395 -
Chy09g01229 698 Gene3D Mitochondrial carrier domain 355 489 IPR023395 -
Chy09g01229 698 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 473 - -
Chy09g01229 698 ProSiteProfiles Solute carrier (Solcar) repeat profile. 587 675 IPR018108 -
Chy09g01229 698 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 12 473 - -
Chy09g01229 698 SUPERFAMILY Mitochondrial carrier 385 672 IPR023395 -
Chy09g01229 698 Pfam Mitochondrial carrier protein 499 583 IPR018108 -
Chy09g01229 698 Pfam Mitochondrial carrier protein 385 467 IPR018108 -
Chy09g01229 698 Pfam Mitochondrial carrier protein 588 677 IPR018108 -
Chy09g01229 698 ProSiteProfiles Solute carrier (Solcar) repeat profile. 497 580 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01229 - - - csv:101216245 1312.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00543 Chy-Chr3:7647164 Chy09g01229 Chy-Chr9:14371808 2.13E-06 dispersed
Chy09g01229 Chy-Chr9:14371808 Chy11g00091 Chy-Chr11:1042433 1.12E-39 dispersed
Chy09g01229 Chy-Chr9:14371808 Chy04g00358 Chy-Chr4:3168118 4.96E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01229 Chy_Chr09 FPKM 17.332903 19.233551 11.124625 14.050424 6.924014 5.051688 6.412408 22.409735 22.905987 24.466846