Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01230 ATGCTCCCCCATATAAATTTGCCACTGGATGCTTCAGATGAGGAATTGAGACTATGCTTGAGTGATGGAAGTGTGTTATGCAGCATATTGGATAAACTATGCCCTGGTGCAGTTCAGGGAGGCAATTCAAAGCCCATCACTCCTGCTATTGAGAGGTTTCTGATAACTCTGGATGAATTAGGACTTCCTGGCTTTGAACCTTCTGCCTTGGAGCAGGGATCTATTGCACCAGTTTTGCACTGTCTGAGCACACTTCGAGCTTCCTTTGATTTGAGTGTTGGGGATGAGTACACTCAAAATCATTCACGAAAAAAATGGAACTTATACGAAGTAGATTCATTAGATGGAATCAATAATTTATCTGGGCAAAGATTTCAAGATTTTCAGAATGGTTCAGTTGTATCAGTGCCATCGTATGGTTTAAACAGCCATATTCAATATGAGGATTATGGAGGGCAAGAACAAAATCATGATGTTTCTGGTTCTAACATTGAGGAGTTGATAAAATCGAAGAATCTTGAGAATGTCTCTACTCAATCACTTTTCAATATGATCAATAGAATTCTGGATGGCAGTGTTGAAACAAAAAATGGAGATGTGTCACATCAAGTAGCTTATATTCTGAGAAAAGTTGTACAAGTGCTTGAGCAGAGAATTTTAACTCATGCTGGAAACCTGAAACATCAAAGCAATCTTTTGAAAGCTCGAGAGGAGAAATTTCTCTCAAAATTAAGAGTCCTTGAAACCCTTGCAACAGGAACCACGGAAGAAAATGAGGTTGTCATGAACCAGCTTCAGCGTTTGAAGATTGAAATGTTCAAGGTAGAGGAGATGAAAAACTGCGAGGAGCAGGATAAGATGGCGTTGAAGGAGCAAAAGGCACTCTGTGATGTCGAGTTATCAGACCTTAAAGATGAGCTAGAAAAAGCCAAGAGGGAACATGAAAATCATTGCTTGCAACAGGAAACAAATGCTAAGGAGGAGAAAGCTAAGTTTGAGGAGAAACTAAATGAACTTGAATGCTTATTAGCTGATTCCAGGAAGCACGCTAAGGACCTTGAGACATTTTCTGAATCTAAATCACTGAAATGGAAAAAGAAAGAGTTCGTCTATCAAAACTTTGTTGATGATCTGCTTCGAGCATTTCAGGAATTAAGGATTTCAGTGGACTCCATCAAACGTGAGGTCTTGAATACAAAAGGAAACTATGCTGAGGATTTTAATTTCCTTGGAATGAAGTTCAAAGGATTAGCAGACGTGGCTCAGAATTACCATTCAGTTTTGAACGAAAATAGAAGATTGTATAATGAAGTTCAGGATTTAAAAGGCAACATTCGAGTGTATTGTCGGATACGGCCATTCCTTCCAGGACAAAGCAAGAAGCTAACTACAGTTGAATATATCGGTGAAAATGGTGAATTGGTAATTATAAATCCCGCTAAACAAGGAAAAGACAATCGTAGACTATTCAAATTCAATAAAGTTTTTGGTCCGACATGTTCACAAGAGGATGTGTTTTTAGACACTCAACCATTAATTCGATCAGTCCTTGATGGATATAATGTTTGCATATTTGCTTATGGACAAACTGGTTCAGGAAAGACCTATACTATGAGTGGACCTGATGTATCATTGAGAACAGAATGGGGTGTTAACTATCGAGCATTAAATGACCTCTTTGAAATTTCTCAAAGCAGGAAGGGCTCTATTTCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAACAAGTCCGTGATCTGCTCTCAACTAGCGTACCTGATGCTGGTATGCATCCTGTTAGATCTACTGGCGATGTCCTGGATTTGATGAAGATCGGATTGACAAACAGGGCAGTTGGAGCCACAGCCTTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACAATTCATGTTCGTGGTGTGGACTTGGAGACAGATGCTATTTTACGTGGTAGTCTCCATTTAATAGATCTTGCCGGCAGTGAAAGGGTGGACCGGTCAGAGGCTACTGGAGATAGGCTGAAAGAGGCACAACACATTAACAAATCATTGTCAGCTCTTGGGGATGTAATTTTTGCTCTTGCACAGAAGACTCCGCACATTCCTTACAGAAATAGCAAACTAACCCAAGTTCTCCAAAGTTCTTTAGGTGGTCAAGCGAAGACACTCATGTTTGTACAGATTAATCCTGATGTAGATTCATACTCCGAAACTATAAGCACCTTGAAGTTTGCTGAAAGAGTTTCTGGTGTAGAGTTGGGTGCTGCCCGTAGCAACAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCCGTTCTCAAGGATACCATTGCAAATAAAGATGAGGAGATTGAGCGGTTGCAGTTGCTTAAAACTAATGGCAATGGTGTAAAGCATGGCGTTGGTTCCCTAAGACAGGAGTCATTTTCTCCTAGAAGACACTCTAGCATGACTCCTCGGCAGAGCCAAAAGTCATCAGGGAGAAAAGGCTTAGGCATGAATAAAGCAGCATCTGACGTGGACAATTTCTCAGATTATGACAGGCGTTCTGAAGCTGGATCACTTCAGTCTATGGATGACTTTAAATATCACAAGCGTTCTGAATCTGGATCACATCTGTTTATAGAAGACTTTAGACAGCATAAGCGTTCTGGATCTGGATCACATCTGTCTGTAGAAGACTTTAGACATCAGAAGGAATCTTCTTCACAGTTAAGGGATTTAAGTCAGAATGTTACTGATGATGTTGACCTTTTAGGCTTTGGAAATGCTGATTCGGATGAGAGGTTAAGTGACATATCAGATGGGGTGCTTTCAATGGGAACTGAAACCGAGGGATCAATTTGTAGTGTCGTGGAATACACTCTCTTCCCTGAAGTTGCAAAGCCATCAGATGTTTCATTTGCCGATACTAAGTACCCAGAGAGCACATTGGATGTGAAAAGGCAAGCAGAGAGCGCAACAACTGGGGTGAAGTCATTGGTTCCTATTCCAGAAAAAACCAATCCACTATCGAAGACTGGCACCAGGCCCCCACAAAAGCCCGTGCAAGCCAAATCGTCAAGAGTTTCATTGACGAAAAGCTCCTCAAAGGCTCCAATAGCATCAAGTATCAAAAAAACGATTGTTGGTAGCTCATCATCGTCGAAAAGCAGGACAAGGTGGAAGTGA 3186 40.93 MLPHINLPLDASDEELRLCLSDGSVLCSILDKLCPGAVQGGNSKPITPAIERFLITLDELGLPGFEPSALEQGSIAPVLHCLSTLRASFDLSVGDEYTQNHSRKKWNLYEVDSLDGINNLSGQRFQDFQNGSVVSVPSYGLNSHIQYEDYGGQEQNHDVSGSNIEELIKSKNLENVSTQSLFNMINRILDGSVETKNGDVSHQVAYILRKVVQVLEQRILTHAGNLKHQSNLLKAREEKFLSKLRVLETLATGTTEENEVVMNQLQRLKIEMFKVEEMKNCEEQDKMALKEQKALCDVELSDLKDELEKAKREHENHCLQQETNAKEEKAKFEEKLNELECLLADSRKHAKDLETFSESKSLKWKKKEFVYQNFVDDLLRAFQELRISVDSIKREVLNTKGNYAEDFNFLGMKFKGLADVAQNYHSVLNENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKLTTVEYIGENGELVIINPAKQGKDNRRLFKFNKVFGPTCSQEDVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDVSLRTEWGVNYRALNDLFEISQSRKGSISYEIGVQMVEIYNEQVRDLLSTSVPDAGMHPVRSTGDVLDLMKIGLTNRAVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKTPHIPYRNSKLTQVLQSSLGGQAKTLMFVQINPDVDSYSETISTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIANKDEEIERLQLLKTNGNGVKHGVGSLRQESFSPRRHSSMTPRQSQKSSGRKGLGMNKAASDVDNFSDYDRRSEAGSLQSMDDFKYHKRSESGSHLFIEDFRQHKRSGSGSHLSVEDFRHQKESSSQLRDLSQNVTDDVDLLGFGNADSDERLSDISDGVLSMGTETEGSICSVVEYTLFPEVAKPSDVSFADTKYPESTLDVKRQAESATTGVKSLVPIPEKTNPLSKTGTRPPQKPVQAKSSRVSLTKSSSKAPIASSIKKTIVGSSSSSKSRTRWK* 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14379765 14388609 - Chy9G169460.1 Chy09g01230 234127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01230 1061 Coils Coil 375 395 - -
Chy09g01230 1061 Coils Coil 293 349 - -
Chy09g01230 1061 MobiDBLite consensus disorder prediction 889 908 - -
Chy09g01230 1061 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 1061 - -
Chy09g01230 1061 ProSitePatterns Kinesin motor domain signature. 654 665 IPR019821 GO:0003777|GO:0005524|GO:0007018
Chy09g01230 1061 Coils Coil 768 795 - -
Chy09g01230 1061 MobiDBLite consensus disorder prediction 977 1061 - -
Chy09g01230 1061 PANTHER KINESIN-4-LIKE ISOFORM X1 1 1061 - -
Chy09g01230 1061 Gene3D - 2 90 IPR036872 -
Chy09g01230 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 792 IPR027417 -
Chy09g01230 1061 Pfam Kinesin motor domain 450 752 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy09g01230 1061 SMART kinesin_4 442 762 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy09g01230 1061 MobiDBLite consensus disorder prediction 889 912 - -
Chy09g01230 1061 MobiDBLite consensus disorder prediction 1005 1061 - -
Chy09g01230 1061 Coils Coil 265 285 - -
Chy09g01230 1061 MobiDBLite consensus disorder prediction 813 834 - -
Chy09g01230 1061 PRINTS Kinesin heavy chain signature 519 540 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy09g01230 1061 PRINTS Kinesin heavy chain signature 704 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy09g01230 1061 PRINTS Kinesin heavy chain signature 624 641 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy09g01230 1061 PRINTS Kinesin heavy chain signature 655 673 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy09g01230 1061 ProSiteProfiles Kinesin motor domain profile. 444 754 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy09g01230 1061 MobiDBLite consensus disorder prediction 800 850 - -
Chy09g01230 1061 SUPERFAMILY Calponin-homology domain, CH-domain 8 85 IPR036872 -
Chy09g01230 1061 Gene3D Kinesin motor domain 386 756 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01230 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101218386 1971.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01011 Chy-Chr1:10639997 Chy09g01230 Chy-Chr9:14379765 0 dispersed
Chy04g01696 Chy-Chr4:23381451 Chy09g01230 Chy-Chr9:14379765 1.91E-46 dispersed
Chy07g01045 Chy-Chr7:15387417 Chy09g01230 Chy-Chr9:14379765 6.01E-96 dispersed
Chy08g01061 Chy-Chr8:17732278 Chy09g01230 Chy-Chr9:14379765 9.45E-152 dispersed
Chy09g01230 Chy-Chr9:14379765 Chy12g01017 Chy-Chr12:15410517 6.33E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01230 Chy_Chr09 FPKM 19.196825 23.937218 22.142315 17.902122 12.982845 15.530409 13.106386 22.582289 25.243122 27.028713