Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01233 ATGGGAACAAAGCATATGCAATATAATTCTAGCATGGTTGGAAGAGTCTCAAAAAGCCACAAAATGCAGTGCAAAGCAGTTGATACACCTAGCAAAGACCTTCAACAGCCATCTCCTAAAAGTTTGGTGAATGCATCATCAAAGAAGCTAGATTCAACAGCTTCAACAAGAGTAGCTTGCTGCAGAAGTCAAAGATTTTGTACTTGTAAAAGTTGTATGGAGTATAGCCGACATAATGAGATCAGCCTAAAATTGGTTCAGAAGAATGAAGCCTCTGAGCCATTTTCAAGTAAAAAATTTGTTGGTGTGGCTGATAAACAGTGTAAACAATTGTTAGATGCATTGGGAATTTTCAATTCGAATAAGGAATTGTTTGTAAATCTACTACAAGACCCAAATTCTCTGTTAATTAAACGTATTGAAGACTCTACTGATTCGAGGAACAGAAAACAGCAGATGATGACTTTCTTTGATAGCAGGTTGTCTGAAAACAAGATAAGAGAAGTGGGGGAATATGAGGAGCCTAAGTACTGTCAAAACTTGAAGTCCTGTGATAGATTACCTGCTGAGGATAGTGATGGTTCTCTATCTTTGGAAAGAATAGTTGTATTAAAGCCAAATTCAACTAGCTCACTACAGGCGGCTGTGGGAACCAATTATTGCTCCTCTCTGAAATCTCATTCTAGTGGCATAAAGAATGGGCAGAGTGACAAGGGAACCCTTTTTTCTTTTAGACAAATAAAAAGGAAGATGAAACAAGCAATGAGGGTAGGGAGAAAAGAAGGTGAATGCCTATCGACTAATGGTATACCTAAAGAAACGCCAGTGATCTGTAGGGTCCCAAAAGATGATGGTAAACAGACGTTTATAGAGGCAACTGGAAGAAGTTCCTATAGTAATATTCAAACAGATGATAAAGGAATTTCTTGTTCATTTCAAGATTCCCTAGAAAGAGATCAAGAAGACAAGGCATTTTACTCTAGAAATGGGGACAAGACGGCTTCTACCAGTGAAAGTACCTACAAAAAAGTTGTCCAGTCAGCTGTGCCAAGTAATCTCAAACGGCAGAAGTCTAAGAAGCACGAAGGAGATAAAGAGGTTTCAAGAAAAACGAAAGCAAAACCATGGGGGTGGGTGATGTGCTTTTCTGATGATGACATATTGCCATCAAAAAAACCTGGATGCGATACTGCAGGCCGTATGAGATATTCCCACCTTGGCAATAAGAAGTTTATTCACGAGAAGAAGACAAAACCTCAGAATGATGAGGAACGATGTTGCAAGACTCCAGAAATGGTTAAAGTAGGAGCTTCTTTTGCAGAGGCGGGGAGGGATGATGATCAATTGCATGCCTCGACTACAGTGTTGAATATATCTCCCGTCATTTTTCCTGAAGTGGATCAAGATCCAATTATTGAAGGGTCTGTGAAGCTCGTAAAAGACGTTGCCACTGTCCAACAGGAAAGAAGCAATTTTTGTGAAGCATCATCTAGATTTGATGACAGTTTCAACACTAGTTGTCAGAGAACAAACAAGTTCAAGGGCTTTGGAGAGAAAGGAAATCCGGAGCTCTCTAAACTGAATTTGCCTTTGGAGGTTCAACGATCACCTTTTTCAGTAGATACATTTTCTTCCAGCTCATTACAATTTCAGACAGTGGAAGATCCTAATGGTTTTTGTGATAGAGTAGTTCAGCCTCTTACAGAACCTATACATGACCAACTTTTGGTAGATGCAACCTCTTGTAATCTGGCTATCACCCCTGGAACAGCGGAGCCATCTAGTGGAGCACTCCCCATTAATTTTGAGGACCAGTGTTCTGGTTTGGCGAGGTTGCAAGAGGTTCTCGATCCTGCCATCGCGTCCTTTCATTGTTGTGGCTCTACCTCTCAGTGTATACTTGAGCTGCTGCAAGTCTCAAAACAGAATTGGAATGAATTGTCAATGGATTGTCATTCTTCAACTTGGCTGCAGATATCATATGTTGACAAAGTTAAGATGTTTAGTAGCCAGCTATGTGGTGATTGTGTGCTTCTTTTCGACTATTTTAATGAAGTTCTTGAGGATGTTTTCCACTGTTATGTTAGATGCTCCTCATGGTTATCATCTTATAAGCCACACATTCAAGCACCTCATAAGGAAAGCGCTTTTTATCACGAGGTTATGCAGCATATGGATTGGTTGCTTTTGCAGCAGCAGCCACCGCAAACACTGGACCACCTTTGTTTAAGAGACTTGAAATGTAGAACATGGATCGACTATCCAACTGAAACTGAAGAGGTTGTTACGATAATAGCGGAATCGGTTTTAAGAGAATTAATCATTGAAAGTGTTGTTTACCTTGGTTTGTGA 2352 40.09 MGTKHMQYNSSMVGRVSKSHKMQCKAVDTPSKDLQQPSPKSLVNASSKKLDSTASTRVACCRSQRFCTCKSCMEYSRHNEISLKLVQKNEASEPFSSKKFVGVADKQCKQLLDALGIFNSNKELFVNLLQDPNSLLIKRIEDSTDSRNRKQQMMTFFDSRLSENKIREVGEYEEPKYCQNLKSCDRLPAEDSDGSLSLERIVVLKPNSTSSLQAAVGTNYCSSLKSHSSGIKNGQSDKGTLFSFRQIKRKMKQAMRVGRKEGECLSTNGIPKETPVICRVPKDDGKQTFIEATGRSSYSNIQTDDKGISCSFQDSLERDQEDKAFYSRNGDKTASTSESTYKKVVQSAVPSNLKRQKSKKHEGDKEVSRKTKAKPWGWVMCFSDDDILPSKKPGCDTAGRMRYSHLGNKKFIHEKKTKPQNDEERCCKTPEMVKVGASFAEAGRDDDQLHASTTVLNISPVIFPEVDQDPIIEGSVKLVKDVATVQQERSNFCEASSRFDDSFNTSCQRTNKFKGFGEKGNPELSKLNLPLEVQRSPFSVDTFSSSSLQFQTVEDPNGFCDRVVQPLTEPIHDQLLVDATSCNLAITPGTAEPSSGALPINFEDQCSGLARLQEVLDPAIASFHCCGSTSQCILELLQVSKQNWNELSMDCHSSTWLQISYVDKVKMFSSQLCGDCVLLFDYFNEVLEDVFHCYVRCSSWLSSYKPHIQAPHKESAFYHEVMQHMDWLLLQQQPPQTLDHLCLRDLKCRTWIDYPTETEEVVTIIAESVLRELIIESVVYLGL* 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14404394 14407582 - Chy9G169490.1 Chy09g01233 234130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01233 783 MobiDBLite consensus disorder prediction 29 48 - -
Chy09g01233 783 PANTHER DUF3741 FAMILY PROTEIN 3 779 - -
Chy09g01233 783 MobiDBLite consensus disorder prediction 323 370 - -
Chy09g01233 783 MobiDBLite consensus disorder prediction 355 370 - -
Chy09g01233 783 Pfam Domain of unknown function (DUF4378) 638 776 IPR025486 -
Chy09g01233 783 MobiDBLite consensus disorder prediction 18 48 - -
Chy09g01233 783 MobiDBLite consensus disorder prediction 329 353 - -
Chy09g01233 783 Pfam Protein of unknown function (DUF3741) 107 134 IPR022212 -
Chy09g01233 783 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 3 779 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01233 - - - csv:101217666 1511.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00171 Chy-Chr6:1125629 Chy09g01233 Chy-Chr9:14404394 4.96E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g314 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00276 Chy09g01233 . . . . . . . . . . . . . . . . . . Bhi12g00270 . . Lac11g2084 Hepe06g1539 . Lcy12g1643 Cla01g00257 Cam01g0264 Cec01g0255 Cco01g0270 Clacu01g0263 Cmu01g0252 Cre09g2257 Lsi09g00252 . . Cme09g01768
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007276 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01233 Chy_Chr09 FPKM 0.949495 0.945049 0.0 0.0 0.141009 0.0 0.0 0.0 0.0 0.0