Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01237 ATGGCCACTTTCTTGTTCCTCTACATCACCATCTTGACGGTGATGGGAGTCAACCGATCTCCGTCCAAATGCAACAGCGTCGGCATTCAGGGCATTGCTTGGGCATTCGGCGGCATGATCTTTGCCCTCGTCTACTGCACCGCCGGCATCTCCGGTGGGCACATTAATCCGGCGGTGACCTTCGGGCTTTTCCTGGCCAGAAAACTGTCCCTAACCAGAGCATTATTCTACATCATAATGCAATGCCTCGGCGCCATCTGCGGCGCCGGCGTCGTCAAGGGCTTCGAGGGGTCCTCCTACGTGCAGAAGCTCGGTGGTGCCAACTTCGTGTCCTCTGGCTACACCAAGGGCAGCGGTCTGGGTGCTGAGATCATCGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACCGATGCTAAGAGAAATGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTCCATTTGGCCACCATTCCCATCACCGGAACCGGCATTAATCCGGCAAGGAGTCTCGGAGCTGCCATCATCTACAACAGGCAACACGCTTGGGATGACCATTGGATCTTCTGGGTGGGACCTTTCGTTGGAGCTACTTTGGCTGCTATTTACCACCAAATCATCATCAGAGCCATTCCATTCAAGGCCAGAGCTTGA 687 54.44 MATFLFLYITILTVMGVNRSPSKCNSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGSSYVQKLGGANFVSSGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWVGPFVGATLAAIYHQIIIRAIPFKARA* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14434288 14435998 + Chy9G169530.1 Chy09g01237 234134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01237 228 CDD MIP 1 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01237 228 SUPERFAMILY Aquaporin-like 1 220 IPR023271 -
Chy09g01237 228 Gene3D Glycerol uptake facilitator protein. 1 226 IPR023271 -
Chy09g01237 228 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 227 IPR034294 -
Chy09g01237 228 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01237 228 PRINTS Major intrinsic protein family signature 36 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01237 228 PRINTS Major intrinsic protein family signature 158 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01237 228 PRINTS Major intrinsic protein family signature 122 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01237 228 PRINTS Major intrinsic protein family signature 198 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01237 228 PANTHER AQUAPORIN PIP1-2-RELATED 1 227 - -
Chy09g01237 228 ProSitePatterns MIP family signature. 54 62 IPR022357 -
Chy09g01237 228 Pfam Major intrinsic protein 1 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01237 228 TIGRFAM MIP: MIP family channel proteins 1 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01237 Chy-Chr9:14434288 Chy10g00443 Chy-Chr10:10543368 1.24E-140 dispersed
Chy09g01237 Chy-Chr9:14434288 Chy11g00808 Chy-Chr11:11587712 1.33E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01237 K09872 - csv:101217440 455.292