Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01240 ATGGCTCGGTTGGTTCTACCATGCAAGAGCGTGGGATTGGCAAGGAATAACATCTTGGGTTTGATTTCATCTGCTCCTGTTCGGGCTGCACATCGGTGTGTTAATTCATTTGGAATTTCAGTCAAACGTAGCACTAGACAGAGGCCCTTATTCACTTCACAGGTGAAATCTGGACTGAATTATCGCTTTCCATATCATTTGCCGTTTGGGGCTAAACAAGCTAGTAGGAAGCTGATTTGTTCAGTTGCAACAGAACCATTGCAAGAAAAAGCTGAAGAGAACAAAATGGATGCACCTAAAGAAATATTTTTGAGAGATTACAAGATGACTGATTACTATTTTGAGACGGTCGATTTGAAATTTTTGTTGGGTGAGGAGAAAACAATTGTCAATTCAAGAATAACGGTGTTCCCTAGAGTTGAAGGGTCCAATGCTCCTCTGGTTTTGAATGGTGAGGATATGAAGTTGATTTCAATTAAGATTAACAGTGAGGACCTGAAGGAGGGTGATTACTATCTGGACTCCCGCCAATTGAAGATTCACTCACCACCTGCTGGAACTTTTACTTTGGAAATTGCCAATGAGATACAGCCTCAGAAAAACACATCTTTGGAGGGACTCTATAAATCATCTGGAAATTTCTGCACACAATGTGAAGCTGAAGGTTTCCGGAAGATCACGTATTACCAGGATCGTCCAGATATAATGGCAAAGTACACATGTCGCATAGAGGCTGATAAGTCATTGTACCCAGTGCTGCTCTCTAATGGAAATCTTATAGAACAGGGTGATTTAGAGGGTGGAAAACATTATGCCCTTTGGGAGGATCCCTTTAAGAAACCCTGCTACTTGTTTGCTTTAGTAGCTGGAAAGTTGGTAAGCAGAGACGATACTTTTATTACTCGTTCGGGTAGGAAAGTCTCCTTGAAGATATGGACCCCAGCTGAAGACTTACTCAAGACTGGGCATGCCATGTATTCCTTGAAGGCAGCTATGAAATGGGATGAAGATGTTTTTGGATTAGAATATGATCTGGATCTCTTCAATATTGTGGCTGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTTTGAATATTTTCAATTCAAAACTTGTCTTGGCATCTCCGGAGACTGCTTCTGATGCAGATTATGCTGCCATATTAGGAGTTATTGGTCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACATGTCGTGATTGGTTCCAGCTAAGCCTTAAGGAAGGCCTTACTGTTTTCCGTGATCAGGAATTTTCATCTGACATGGGAAGTCGTGCTGTGAAAAGAATTGCTGATGTTTCAAGACTTAGAAACTATCAGTTTCCTCAGGATGCTGGTCCCATGGCTCATCCAGTTCGACCACATTCCTATATCAAGGTCTATGAGAAGGGTGCTGAAGTCGTGAGGATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTTAAAAGACATGATGGTCAAGCTGTTACCTGTGAAGATTTCTACGAGGCAATGCGAGATGCAAATGATGTTGATTTTGCTAACTTCTTATTATGGTACTCTCAAGCCGGGACCCCTCAAGTCAATGTTACATCATCTTACAATCCCGATGGTCATACATACACTTTAAAGTTCTCGCAATATGTTCCGCCAACTCCTGGGCAGCCAATTAAAGAGCCAATGTTTATACCTGTTGCTCTTGGTTTGCTAAACTCGTCTGGTTGTAATATGCCTCTTTCCTCCGTATATCATGATGGGGTATTGCAGTCTATATGTGGAGCTAATCATCAGCCAGTCTTCTCCACAGTCCTCAGGCTGACTAAGGAAGAAGAAGAGTTTGTCTTCTCGGAAGTACCTGAGCGGCCAGTTCCATCTTTGTTTAGGGGCTACAGTGCTCCTGTCCGTGTGGAAACAGATCTAAGTGACGATGATCTATTTTTCCTCCTCGCCAATGATTCAGATGAGTTCAATCGTTGGGAGGCTGGACAAGTGTTGGCACGGAAACTGATGCTCCAACTGGTGGCTGATCACCAACAACATAAGCCATTGGTTCTCAACTCAAAGTTTGTTCAGGGTCTGAAATCCATACTTCGTGACACGAGCTTGGATAAAGAATTCATTGCCAAAGCAATAACTCTTCCTGGCGAAGGGGAAATAATGGACATGATGGAGGTTGCAGATCCTGATGCTGTTCATGCTGTTCGAACTTTCATTAGGAAGGAACTGGCCTATGCATTGAAAGAAGATCTTCTTACTACAGTACACAACAATAGAAGTTCAGAAAATTATGAATTTAACCATCCTGAAATGGCCAGGCGTGCTTTGAAGAATACTGCTCTAGTATATCTTGCGTTAATTGAGGATACTGAGATTGCCGATCTTGTGCTTCATGAGTATAAGATTGCCTCGAATATGACTGAGCAATTTGCAGCTTTGGCAGCTATAGCTCAGAAGCCAGGTGAAACTCGTGACAAGATTCTTGCTGACTTCTATAGCAAGTGGCAGCATGACTATTTGGTTGTCAATAAATGGTTTGCTCTTCAAGCCATGTCAGACATTCCTGGTAATGTCGAGAATGTTCGGAACCTCCTAAATCACAAGGCCTTTGACTTGCGAAATCCAAACAAGGTATATTCTTTGATTGGAGGCTTCTGCGGATCAATTGTTAACTTTCACTCAAAGGACGGATCAGGCTACAAATTCTTGGGAGAAATTGTCATGCAACTAGACAAAATTAATCCCCAGGTTGCCTCTCGAATGGTCTCTGCCTTCTCGAGATGGAGGCGTTATGACGAATCGCGACAAGAACTTGCCAAGGGACAACTGGAGATCATAATGTCTGCCAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCTTGA 2928 42.45 MARLVLPCKSVGLARNNILGLISSAPVRAAHRCVNSFGISVKRSTRQRPLFTSQVKSGLNYRFPYHLPFGAKQASRKLICSVATEPLQEKAEENKMDAPKEIFLRDYKMTDYYFETVDLKFLLGEEKTIVNSRITVFPRVEGSNAPLVLNGEDMKLISIKINSEDLKEGDYYLDSRQLKIHSPPAGTFTLEIANEIQPQKNTSLEGLYKSSGNFCTQCEAEGFRKITYYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIEQGDLEGGKHYALWEDPFKKPCYLFALVAGKLVSRDDTFITRSGRKVSLKIWTPAEDLLKTGHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRIADVSRLRNYQFPQDAGPMAHPVRPHSYIKVYEKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFYEAMRDANDVDFANFLLWYSQAGTPQVNVTSSYNPDGHTYTLKFSQYVPPTPGQPIKEPMFIPVALGLLNSSGCNMPLSSVYHDGVLQSICGANHQPVFSTVLRLTKEEEEFVFSEVPERPVPSLFRGYSAPVRVETDLSDDDLFFLLANDSDEFNRWEAGQVLARKLMLQLVADHQQHKPLVLNSKFVQGLKSILRDTSLDKEFIAKAITLPGEGEIMDMMEVADPDAVHAVRTFIRKELAYALKEDLLTTVHNNRSSENYEFNHPEMARRALKNTALVYLALIEDTEIADLVLHEYKIASNMTEQFAALAAIAQKPGETRDKILADFYSKWQHDYLVVNKWFALQAMSDIPGNVENVRNLLNHKAFDLRNPNKVYSLIGGFCGSIVNFHSKDGSGYKFLGEIVMQLDKINPQVASRMVSAFSRWRRYDESRQELAKGQLEIIMSANGLSENVFEIASKSLAA* 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14446389 14455048 - Chy9G169560.1 Chy09g01240 234137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01240 975 PANTHER - 61 470 IPR012779 GO:0008270
Chy09g01240 975 PANTHER - 469 975 IPR012779 GO:0008270
Chy09g01240 975 TIGRFAM pepN_proteo: aminopeptidase N 106 973 IPR012779 GO:0008270
Chy09g01240 975 Pfam Domain of unknown function (DUF3458) Ig-like fold 534 648 IPR035414 -
Chy09g01240 975 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 100 290 IPR042097 -
Chy09g01240 975 Pfam Peptidase M1 N-terminal domain 127 284 IPR045357 -
Chy09g01240 975 PANTHER BNAC06G01820D PROTEIN 61 470 - -
Chy09g01240 975 PANTHER BNAC06G01820D PROTEIN 469 975 - -
Chy09g01240 975 CDD M1_APN 106 531 - -
Chy09g01240 975 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 302 540 - -
Chy09g01240 975 Gene3D Neutral Protease Domain 2 378 533 IPR027268 -
Chy09g01240 975 Pfam Domain of unknown function (DUF3458_C) ARM repeats 652 974 IPR024601 -
Chy09g01240 975 PRINTS Membrane alanyl dipeptidase (M1) family signature 224 239 IPR001930 GO:0006508
Chy09g01240 975 PRINTS Membrane alanyl dipeptidase (M1) family signature 356 366 IPR001930 GO:0006508
Chy09g01240 975 PRINTS Membrane alanyl dipeptidase (M1) family signature 411 423 IPR001930 GO:0006508
Chy09g01240 975 PRINTS Membrane alanyl dipeptidase (M1) family signature 274 289 IPR001930 GO:0006508
Chy09g01240 975 PRINTS Membrane alanyl dipeptidase (M1) family signature 392 407 IPR001930 GO:0006508
Chy09g01240 975 Gene3D tricorn interacting facor f3 domain 110 292 IPR042097 -
Chy09g01240 975 Gene3D - 534 648 IPR038438 -
Chy09g01240 975 Pfam Peptidase family M1 domain 326 526 IPR014782 GO:0008237|GO:0008270
Chy09g01240 975 Gene3D - 650 974 IPR037144 -
Chy09g01240 975 Gene3D - 294 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01240 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - tcc:18606548 1598.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00262 Chy-Chr7:2066598 Chy09g01240 Chy-Chr9:14446389 1.12E-21 dispersed
Chy07g00264 Chy-Chr7:2084262 Chy09g01240 Chy-Chr9:14446389 7.55E-20 dispersed
Chy09g00733 Chy-Chr9:9757809 Chy09g01240 Chy-Chr9:14446389 6.39E-10 dispersed
Chy09g00734 Chy-Chr9:9780718 Chy09g01240 Chy-Chr9:14446389 1.02E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01240 Chy_Chr09 FPKM 0.0 0.0 2.223246 2.619207 3.140429 3.389239 3.410935 0.0 0.0 0.0