Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01243 ATGCTGCTGGTCCAACAGCGGCGGCCGTTAGAAGTTGAACTTTCACTCTCCGGTGGTGACCGTAACCTAGAGGACCAAAATTTTGATTTTCCATTCATCCAAACAGATAACAAATCTCAAGGAAAACTGGTTGAGAGTGACATTGCAAGTTCTACCAATGGTTTTCTGGTGTGTCTTGTAGATAAGAAAGCTGAAATGGGAGGTTGCTGCTGCTGTTCTTCGAAAGGAACAGAATCAAATATTGCACCAGGCTACTATTATTACCCAAGACCATCGGAGGAACATGTTCCTTTGTCGCCACTTAGAACTCCCCGAGCATTTTCAACAGGGCTTTTAGTTGATACAAATCTAGATACATCAATCCCGGACACTTATAGATCACCTCCATTGCCTATGCCATATGATGTTGTTTTAACAAGTCCACTTACTCCACCTGTGGTTCAAGAAATTGGCAGCTATAAGAATGAAGCTGCAGCTCAGACAACAAATTCCAATACAATTCAAGAAACAGCATGCATAAATACTCGGGAAACATCAGCCAAATGTGAAGGCGTCGATGAATCAGATTGCAAGAAGCATACAGATTTTGAAGTGGACGCATTAAAGGAATCCGAAAATGAACTTTCAAAGGGTGTAGAATCTGCTGTCCTACCCATTGAAGAAGAGGATGTTTGCCCCATCTGTTTGGAAGAATATGATGGAGAGAACCCAAAACTTACCACAAAATGCGAACATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGCGATCAGGAAATGGTTTTTAGCTCTCCAATTGATTAG 831 41.64 MLLVQQRRPLEVELSLSGGDRNLEDQNFDFPFIQTDNKSQGKLVESDIASSTNGFLVCLVDKKAEMGGCCCCSSKGTESNIAPGYYYYPRPSEEHVPLSPLRTPRAFSTGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTSPLTPPVVQEIGSYKNEAAAQTTNSNTIQETACINTRETSAKCEGVDESDCKKHTDFEVDALKESENELSKGVESAVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSSPID* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14482230 14487739 - Chy9G169590.1 Chy09g01243 234140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01243 276 SMART ring_2 225 265 IPR001841 -
Chy09g01243 276 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 66 276 - -
Chy09g01243 276 Pfam Ring finger domain 224 265 IPR001841 -
Chy09g01243 276 SUPERFAMILY RING/U-box 219 272 - -
Chy09g01243 276 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
Chy09g01243 276 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 66 276 - -
Chy09g01243 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 272 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01243 - - - csv:101215765 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01243 Chy-Chr9:14482230 Chy03g00227 Chy-Chr3:2130011 2.71E-08 dispersed
Chy02g01554 Chy-Chr2:13606505 Chy09g01243 Chy-Chr9:14482230 6.97E-11 transposed
Chy04g01832 Chy-Chr4:24544307 Chy09g01243 Chy-Chr9:14482230 2.80E-13 transposed
Chy09g00182 Chy-Chr9:1558046 Chy09g01243 Chy-Chr9:14482230 5.55E-25 transposed
Chy06g00161 Chy-Chr6:1046604 Chy09g01243 Chy-Chr9:14482230 2.25E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01243 Chy_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0