Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g01247 | ATGGGTTTCCCTGCAACTTACACTGAGCTTCTTCTCCCTAAGCTCTTCATCCATTTACTCTCCTTCCTCGGCTTTCTCCGTAAGCTTATCTCCTTCATCTTCCGTCTCTTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCCCCCCGATTCCTTCCCCACTTCTCCCTTCACCCACCTCGATCCTCTCTCCGCTGCTCTTCTTCGTGAGATTCTCCCCGTCGTCAAGTTTTCCGACCTTCTCGACCCACCTGACTGCTGCGCTGTTTGTCTCTACGAGTTCGAGTCCGACGATGAGATCCGCCGTCTCGCTAACTGCCGTCACATCTTCCACCGTGGATGCCTCGATCGATGGATCGGTTACGGTCAGAGAACCTGCCCGCTGTGCAGAACTGTGTTTATTCCTCCTGATTTGAGAAGTGGTGGTGGTTGTAATTTTGATGATAGGCTTTGGGAGGATTCCGAAATCTTTGAACCTCTCCACTCCGATTCTTCTTCTTCAAATCTTCTCACAACCGATGGTTTGTAG | 540 | 51.11 | MGFPATYTELLLPKLFIHLLSFLGFLRKLISFIFRLFGLQDFLEPDIPWPNPPDSFPTSPFTHLDPLSAALLREILPVVKFSDLLDPPDCCAVCLYEFESDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGGCNFDDRLWEDSEIFEPLHSDSSSSNLLTTDGL* | 180 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 14525100 | 14525639 | - | Chy9G169630.1 | Chy09g01247 | 234144 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g01247 | 179 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Chy09g01247 | 179 | CDD | RING-H2 | 91 | 134 | - | - | |
| Chy09g01247 | 179 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Chy09g01247 | 179 | PANTHER | BNAA09G11240D PROTEIN | 1 | 158 | - | - | |
| Chy09g01247 | 179 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Chy09g01247 | 179 | SUPERFAMILY | RING/U-box | 76 | 140 | - | - | |
| Chy09g01247 | 179 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 158 | - | - | |
| Chy09g01247 | 179 | SMART | ring_2 | 91 | 133 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy09g01247 | Chy-Chr9:14525100 | Chy09g00102 | Chy-Chr9:852028 | 2.40E-13 | dispersed | |
| Chy02g00696 | Chy-Chr2:4207564 | Chy09g01247 | Chy-Chr9:14525100 | 3.88E-16 | transposed | |
| Chy11g01659 | Chy-Chr11:23054365 | Chy09g01247 | Chy-Chr9:14525100 | 8.20E-35 | wgd | |
| Chy06g00158 | Chy-Chr6:1029275 | Chy09g01247 | Chy-Chr9:14525100 | 4.20E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g01247 | K16281 | - | csv:101215533 | 371.703 |