Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01251 ATGATGGTGGTTGGACCGTGGGGGACGACGGCTACGGCGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCATCTAATCCTTCCTCTATTGGTTTACAATCTTTCGAACTAAGGCAACAACATCAACAACAACAAAACCAATCATCTTTCCCCATTTTTCATCTTAGAAACTCTAAGTTTTTGGCCCCAACTCAAGAACTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATCATTCTTCTTCGCCAAAACACAAACATCCTTCTTCTTCTTCAACCAATTTCTCTCTTCACTCACTTGACTTCATGGAGTTGCAAAAGAGGAAAACCAAGCTTTTTTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGTGAGCAAATGAAGGCAGTAGTGGCATCGTTCGAAGCAGTAGCGGGGAGTGGGGCGGCGAGGGTGTATTCGGCGTTGGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGACAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACCACAAGAGGAGAAACCCCAAGACTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGTCCTCAACGTGGCCTTCCTGAGCGTTCTGTTTCCGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTCTCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGACTGTGGAAGCCAATGGTAGAGGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGATAACAGTTTCAACAACAATGCCAACAACTCTTTTGATGGGGTGACGGATTTCAATGACGACATTGACGGTCATCGGTCTATTGCCACAAGACTAGAGGATCAAAAACCGACACCAGACCAACTCTTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAGCAACTCGGAGAAGAATAATGATCATTCAAGAACAATTAAAACGATGCAAAACCACCACGGACACCAACTCCACGGAAACCACAACCACACCTTCGGACGAGTAGTGGGGGATGCATTTGGCACGGTAGAACTCGACTTCTCGTCCTACAACCACCATACAGGTAGTGGTGGAGTTTCGTACCATAACAGCAGTCACAACAACAACAGTCAACATTTCAACAACGGCAATGGTGGAGGCGTGTCGTTGACTTTAGGGTTACAGCAGCATGCCGCGGCCGGGGGGAATGGAAACGGAGGTGTGAGCATTGCCTTCGCTTCAGCAGGACCGGCGGTGGGGCAAAACTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAATATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCTTATAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATAA 1581 45.16 MMVVGPWGTTATADSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQQQQNQSSFPIFHLRNSKFLAPTQELLYEFCSLGITNHSSSPKHKHPSSSSTNFSLHSLDFMELQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGSGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNNANNSFDGVTDFNDDIDGHRSIATRLEDQKPTPDQLLRIDSECLSSIISSNSEKNNDHSRTIKTMQNHHGHQLHGNHNHTFGRVVGDAFGTVELDFSSYNHHTGSGGVSYHNSSHNNNSQHFNNGNGGGVSLTLGLQQHAAAGGNGNGGVSIAFASAGPAVGQNSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14557463 14560299 + Chy9G169670.1 Chy09g01251 234148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01251 526 SMART HOX_1 236 300 IPR001356 GO:0003677
Chy09g01251 526 CDD homeodomain 236 297 IPR001356 GO:0003677
Chy09g01251 526 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 469 - -
Chy09g01251 526 SMART prehox3 64 185 IPR006563 -
Chy09g01251 526 SUPERFAMILY Homeodomain-like 237 303 IPR009057 -
Chy09g01251 526 Gene3D - 239 301 - -
Chy09g01251 526 Coils Coil 117 137 - -
Chy09g01251 526 MobiDBLite consensus disorder prediction 426 445 - -
Chy09g01251 526 Pfam Homeobox KN domain 253 292 IPR008422 GO:0003677|GO:0006355
Chy09g01251 526 ProSiteProfiles 'Homeobox' domain profile. 233 296 IPR001356 GO:0003677
Chy09g01251 526 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 15 469 - -
Chy09g01251 526 Pfam Associated with HOX 70 183 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00963 Chy-Chr2:6403463 Chy09g01251 Chy-Chr9:14557463 1.00E-71 dispersed
Chy09g01251 Chy-Chr9:14557463 Chy11g00350 Chy-Chr11:3195879 6.02E-73 dispersed
Chy09g01251 Chy-Chr9:14557463 Chy04g01857 Chy-Chr4:24758171 1.33E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18517 PF07526 POX 1.80E-40 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01251 - - csv:101215049 927.546