Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01259 ATGGCGGCTGCATCGAACTCTCTCTCCCTGAAGCACAGCCTCTCTGTCTGGTGCCCGCACTCTACTTCCTTTTCCGTACATCATCAACAGCCTTCTTCTGTTGCCTTCAGAGGTTTCCGGAGAAGCTACGTTTCTGCCTCCTCGGATTTCGCCAACAACAATAGAGAGTTTGTGATTGTTGGTGGCGGAAATGCTGCTGGTTATGCTGCTCGTACTTTCGTTGAACACGGGATGGCGGATGGACGGCTTTGTATAGTATCTAAGGAGGCGTTTGCACCGTACGAGCGTCCGGCTTTGACAAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGATCTGGTGGGGAAAGGCAAACACCAGAATGGTACAAGGATAAAGGTATTGAGACGTTTTATCAAGATCCAGTTATGGGCATTGATATAAAAAACCAAACCCTGAGAACTAATTCAGGCAAGCTGCTCAAGTATGGAGCCCTTTTCATAGCAACAGGATGTACAGCCTCAAGATTTCCTGATAAGATCGGTGGTGGGCTACCTGGTGTTCACTACATCCGAGATGTTGCAGATGCAGATTCACTAATTTCCTCATTGGAGAAAGCAAAAAAGGTGGTGGTTGTTGGTGGTGGTTATATTGGTATGGAGGTCGCTGCAGCAGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCCGAGAATCATCTATTGCAAAGACTTTTTACTCCTTCGCTGGCCAAGAAATATGAAGAATTTTACCAGGAGAATGGTGTTAAATTCTTAAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAAATGGTTGGGTCGCTTCTGTTAGACTTGCGGATGGATCCTCCATTGAAGCAGACACGGTAGTAATAGGCATTGGTGCAAAGCCTGCTGTCGGTCCGTTTGAGCAAGTGGGATTGAATAGCACTGTTGGCGGTATACAGGTTGATGGCCTGTTCAGAACAAAAGTTCCAGGAATTTTCGCAGTTGGGGATGTGGCAGCATTCCCATTAAAGCTGTATGATCGTGTAGCTCGGGTCGAACATGTGGATCATGCTCGTCGGTCAGCTCAGCACTGTGTCAAAGCATTACTAACTGCTCAAACTCAAATATACGATTATCTTCCATACTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGGAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGTGAGACAGTTGAAATTGGGAACTTTGATCCTAAGATCGCTACTTTTTGGATTGATTCTGGTAAATTAAAAGGGGTTTTTCTTGAAAGCGGAAGTCCTGAGGAATTTGAACTTCTTCCTAAACTCGCAAGGTTCCAGCCTTCGGTTAATAAATCCAAACTTCAAAATGCATCTTCAGTCGAGGAAGCACTTGATATTGCCCGTGCATCTTTGCAACAGAAGGTTGTGTTGAACGTTGAAATGAGGGATTTAAAGACAAAGAAAAAGGTGTTGGGTGCTGTTTCTGGTCTTTTGGGTGTTGTATCAATGGCAGCAGAAGAGAACAAAATCACAGTGATTGGAACTACAGATCCAATTAAGATTGTTAAAAAGGTAAGAAAGGTTTGGCCATGTGCTAATATTATTAGTGTTGGACAAGAGAAAGAAGATGCAACGAAAGAAGCTGCAAAGAAAGAAGAATCTCAACCTAAAATTGAGCAAATTGATTGGGCTAAGGCTTACACAACCTTCTATTCTTACCCCACAACTCATTACTGTTATCCATATCAAGAACCATATTATAAAGTGGTATTGAAATTGGAATTACACGGTGATAGAGAAAAGCAAAAAGCCTTGAAATCAGTATCTGTTCTTCAAGGAATTGAATTGATCGCCATGGACATGAAAGACAAAAAGTTAACAGTGATTGGAGATGTAGACCCAGTTGATGTGGTTGGGAAGGTCCGAAAGCATTGGCCGGACGCCGACATCGTCAGCATCGGCCCGGCAAAGGAAGAGAAGAAGCTGGAAGAGCAAAAGAATCAAAATAATGATCAAAAGATGGAAGAGCTACTTAAATTGTACAAAAGCTATGATAATCATCATGCTTCTGCTGTTAACTATGATGTGTATGGTGATCATGTGGAGGAGAATTCAAACACTTGTGTCATAAGTTAG 2178 42.75 MAAASNSLSLKHSLSVWCPHSTSFSVHHQQPSSVAFRGFRRSYVSASSDFANNNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKDKGIETFYQDPVMGIDIKNQTLRTNSGKLLKYGALFIATGCTASRFPDKIGGGLPGVHYIRDVADADSLISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAKKYEEFYQENGVKFLKGASIKNLEAGANGWVASVRLADGSSIEADTVVIGIGAKPAVGPFEQVGLNSTVGGIQVDGLFRTKVPGIFAVGDVAAFPLKLYDRVARVEHVDHARRSAQHCVKALLTAQTQIYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVFLESGSPEEFELLPKLARFQPSVNKSKLQNASSVEEALDIARASLQQKVVLNVEMRDLKTKKKVLGAVSGLLGVVSMAAEENKITVIGTTDPIKIVKKVRKVWPCANIISVGQEKEDATKEAAKKEESQPKIEQIDWAKAYTTFYSYPTTHYCYPYQEPYYKVVLKLELHGDREKQKALKSVSVLQGIELIAMDMKDKKLTVIGDVDPVDVVGKVRKHWPDADIVSIGPAKEEKKLEEQKNQNNDQKMEELLKLYKSYDNHHASAVNYDVYGDHVEENSNTCVIS* 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14615969 14628231 + Chy9G169750.1 Chy09g01259 234156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01259 725 PRINTS Pyridine nucleotide disulphide reductase class-I signature 56 78 - -
Chy09g01259 725 PRINTS Pyridine nucleotide disulphide reductase class-I signature 340 347 - -
Chy09g01259 725 PRINTS Pyridine nucleotide disulphide reductase class-I signature 212 237 - -
Chy09g01259 725 PRINTS Pyridine nucleotide disulphide reductase class-I signature 300 314 - -
Chy09g01259 725 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 19 487 - -
Chy09g01259 725 Gene3D - 482 557 - -
Chy09g01259 725 Gene3D - 599 673 - -
Chy09g01259 725 Gene3D - 58 373 IPR036188 -
Chy09g01259 725 Gene3D - 180 307 IPR036188 -
Chy09g01259 725 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 370 IPR023753 GO:0016491
Chy09g01259 725 PANTHER APOPTOSIS-INDUCING FACTOR 1 19 487 - -
Chy09g01259 725 Coils Coil 670 690 - -
Chy09g01259 725 Gene3D - 390 477 IPR016156 GO:0016491|GO:0050660
Chy09g01259 725 PRINTS FAD-dependent pyridine nucleotide reductase signature 58 77 - -
Chy09g01259 725 PRINTS FAD-dependent pyridine nucleotide reductase signature 299 315 - -
Chy09g01259 725 PRINTS FAD-dependent pyridine nucleotide reductase signature 212 230 - -
Chy09g01259 725 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Chy09g01259 725 PRINTS FAD-dependent pyridine nucleotide reductase signature 325 347 - -
Chy09g01259 725 SUPERFAMILY FAD/NAD(P)-binding domain 53 376 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01259 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - csv:101214011 952.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00014 Chy-Chr4:170001 Chy09g01259 Chy-Chr9:14615969 2.32E-10 dispersed
Chy09g00343 Chy-Chr9:2996018 Chy09g01259 Chy-Chr9:14615969 4.09E-99 dispersed
Chy09g01259 Chy-Chr9:14615969 Chy09g01392 Chy-Chr9:15643740 7.87E-11 dispersed
Chy09g01259 Chy-Chr9:14615969 Chy09g01260 Chy-Chr9:14631817 4.98E-11 tandem
Chy11g01667 Chy-Chr11:23143367 Chy09g01259 Chy-Chr9:14615969 7.64E-09 wgd
Chy06g00147 Chy-Chr6:942739 Chy09g01259 Chy-Chr9:14615969 8.59E-13 wgd
Chy07g01204 Chy-Chr7:16884910 Chy09g01259 Chy-Chr9:14615969 5.40E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01259 Chy_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.185803 0.098877 0.074987