Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01305 ATGGATCCATGTCCTCCCGAACCACCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGATACTAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCCACCGAGTGCCTACCACCTTTGGTGAGACTAGTTCTTAATTCCTCCTATAAAATCTTTGCTCTCTCCCTCTTTCTCCAAGCTTTCAACTCCTTAATCTCTGTTCTGAATTTTTTTCAGGACATGACTCTGGCTACCCCAACTCAGGATTTGGTAGCCAAGGATCTTCATGGATATGAGTGGAGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCCAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGATATCAATCAAATACATAACTTTAAGGCACGTGAACAGAGAGAGAGTACACCATGCAGTGATATGTGGAAAACCGAAGGGCTCAGCCCCACTGAAAAATAAAACTAATGGGCCTAGTCTTGCACAAATATGCCATATGAAGCTACGGGGTTTAGATTCATTGGCTGCTCAACATACTCAAAATGCCTCAAGTGTTCTTAAGTTCCTAGCCTGCATGTTTACTGCAAATTACCTTAAAGATTCTCCCAGACCTCTATGCACGAGCAAACAATTCTGCTGTAGAATATTCAACGAGTATTGCTCATTAGCAGTGATATGTAAGAGCCCTCAGTCAGCTGTCCTCAAGTGTGGAAGAGAGTCGTATAAAACTTATAGACGATGGAACATTCAAATGTTGCAAACGGGAGACAATGGAGAGTTGCGTGTTGGGGTAAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACTACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGCCTCAATAAATACTTGGAAGCTGTCAACAACAAGTTTTCTATTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTACAATGGGATGAACAAACATCTATTCTAAGACCTGACAGAGTATCACCTTGGGATATAGACCCACTCACGTCTTCAGCAGTCACAGGCCTATCTCAACCCATTTCAAAAAATAAAAGGCCTCGACAACCAACTCCAGCTCATGATGGTGCTGATTTGACTAAGTCAACACATTGGGATTCTGGATTGGCACAGTCACATGATGGTAAACAATGCAGTAATGCGGCTGAAGGCAGAAAAGGTGAAAATAATGAATCGTGTCACCATAGAGAGACAGATACTATCAGCAACAGCTCATGTGTATCAAGAACACAGACTGATACCTGGCTATCTCCTACTCAATCGCATAGTTATAAACACCCAGTAAATGACATGGCGCAGGATTCCAAAACTGTCCCTAGCAGTGGTTGGACCTTTCTATTAGGAACTCCAACCTCTCACTTGGTTAAGTTAAGTGATGATCAAATACTTGATCCCATTGAAAATGGGAAGAAAGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTGCTGAGAAAGCATCTTCTCAACCAAGCAGTGGGTCTAGCGACCCAGATGGGCGCATCAGTACCTTATCCGTGGCTCAGTCCGATCCAAAATCTGACAACTTAGAAGTCTCTATAGAAAGAAAATCAGAACCATCACAAGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCAGCTAACACTAGAAGCCGCACCAAGGTTCTCATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATATTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACCGACGATGAAGGGGATATGATGCTTGTTGGAGATGATCCATGGGAAGAATTCCGCAACATGGTGAGGAGAATTTTTATATGCTCTAAGGAGCAAGTGAAAAATATGAGCTCAGGAAGCAAGCAGCTGACATCAATAGAAGTTGAAGGAGATGTAGTAACCCCAGTCTCCCCTGCAGTTTGA 2235 43.36 MDPCPPEPPRPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLVRLVLNSSYKIFALSLFLQAFNSLISVLNFFQDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRISIKYITLRHVNRERVHHAVICGKPKGSAPLKNKTNGPSLAQICHMKLRGLDSLAAQHTQNASSVLKFLACMFTANYLKDSPRPLCTSKQFCCRIFNEYCSLAVICKSPQSAVLKCGRESYKTYRRWNIQMLQTGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSIGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSILRPDRVSPWDIDPLTSSAVTGLSQPISKNKRPRQPTPAHDGADLTKSTHWDSGLAQSHDGKQCSNAAEGRKGENNESCHHRETDTISNSSCVSRTQTDTWLSPTQSHSYKHPVNDMAQDSKTVPSSGWTFLLGTPTSHLVKLSDDQILDPIENGKKGETVASCRLFGIDLNHLAAEKASSQPSSGSSDPDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEIQCNQSSSANTRSRTKVLMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFRNMVRRIFICSKEQVKNMSSGSKQLTSIEVEGDVVTPVSPAV* 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15000111 15004635 - Chy9G170210.1 Chy09g01305 234202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01305 744 MobiDBLite consensus disorder prediction 610 633 - -
Chy09g01305 744 ProSiteProfiles B3 DNA-binding domain profile. 54 150 IPR003340 GO:0003677
Chy09g01305 744 SUPERFAMILY CAD & PB1 domains 628 709 - -
Chy09g01305 744 Gene3D - 628 721 - -
Chy09g01305 744 SMART B3_2 16 150 IPR003340 GO:0003677
Chy09g01305 744 MobiDBLite consensus disorder prediction 573 602 - -
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 9 1 45 - -
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 9 270 731 - -
Chy09g01305 744 ProSiteProfiles PB1 domain profile. 633 714 IPR000270 GO:0005515
Chy09g01305 744 CDD B3_DNA 14 137 IPR003340 GO:0003677
Chy09g01305 744 Pfam Auxin response factor 308 386 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy09g01305 744 Gene3D - 343 416 - -
Chy09g01305 744 Gene3D - 13 149 IPR015300 -
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 78 137 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 270 731 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy09g01305 744 Pfam B3 DNA binding domain 16 137 IPR003340 GO:0003677
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 45 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy09g01305 744 MobiDBLite consensus disorder prediction 573 633 - -
Chy09g01305 744 MobiDBLite consensus disorder prediction 413 427 - -
Chy09g01305 744 Pfam AUX/IAA family 623 669 IPR033389 -
Chy09g01305 744 Pfam AUX/IAA family 679 711 IPR033389 -
Chy09g01305 744 SUPERFAMILY DNA-binding pseudobarrel domain 13 142 IPR015300 -
Chy09g01305 744 MobiDBLite consensus disorder prediction 413 489 - -
Chy09g01305 744 MobiDBLite consensus disorder prediction 445 467 - -
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 9 78 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01305 K14486 K14486, ARF; auxin response factor - csv:101209208 924.465
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy07g01133 Chy09g01305 CCT
Chy07g01133 Chy09g01305 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01133 Chy-Chr7:16265895 Chy09g01305 Chy-Chr9:15000111 1.44E-46 dispersed
Chy09g01305 Chy-Chr9:15000111 Chy02g02705 Chy-Chr2:29881835 3.71E-28 dispersed
Chy09g01305 Chy-Chr9:15000111 Chy11g01328 Chy-Chr11:19476458 4.73E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g162 . Blo03g00258 Bda06g00159 . . . . . . Cmo16g00585 Cma02g00922 . Car02g00671 Car15g01164 . Cpe14g00449 . . . . . . . . Cla07g01086 Cam07g1412 Cec07g1249 Cco07g1226 Clacu07g1150 Cmu07g1130 Cre07g1510 . . Cone6ag0864 Cone9ag0869 . . Chy09g01305 Cme07g01536 . . . . . . . . . Cmo02g00930 . . Cma16g00533 . . . . Bhi12g00124 . . . . . Lcy12g1556 . . . . . . . . Csa04g00677 Chy07g01133 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000766 2 4 1 1 2 3 5 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 3 3 3 2 5 3 2 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18521 PF02362 B3 3.00E-16 CL0405 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01305 Chy_Chr09 FPKM 29.978056 31.819988 73.775055 76.246544 71.377777 79.082642 76.866287 27.709417 26.547598 25.847786