Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01317 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGTCCAAAACCAAGTGTTTCAATTTTAGAGAGAAAAATTAGACCACAGAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAAGCAATACAAAGTTTTGTTATTACAATAATTATAGTCTCACACAACCAAGATACTTTTGCAAAACTTGCAGAAGGTATTGGACTGAAGGTGGATCTTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGAAAAAACAAAAGACCTTCTAATTCTTCATCATCTACATCTCCCACACCACCTAATTCTTCTTCTCAATCTCAACCTAATTTTCCCAAGAAAATTCTTGATCATCAGCTCCCTCAAAACCCTAAAATCACCCCCTCCCAAGATCTCAACTTGTTTTTTCCACCCTCAAACAATCAAGATCGTCATCGTTTCACCACTACTAACAACAACCTCTCCGAAATGATCCTTGTCGGTAGTAACCCTTCCATTAATAATGCCACCTCTTCCTCCGCTTCTGCAACGACGACAATGTCGTCACCACCCCCATCGCAACCTTCGGTGATGGAGCTTCTCACCGGGATGGCGAATAACAACAACAACAACAACTCTAGTAGGGGTTTGAATTGTTTCGTTCCTATGTCGTCAGTTGTTGTCCCTGATCCTAGCTCTGTTTACACGGGAGGGTTTCCTGATCTTCATGATCAATTCAAACCAAGCCTTGGATTCTCTCTCGACGGATATGGTGTCGTCTCGACCGAGGCGAGTAATGGTGCAGGGAGGCTTATGCCGCTGCCATTTGAGGATTTGAAGCAAGTGTCTAATGGAGTTGAACAAGGGAAAGATCAGCAAGGAGATGATCATAATTCAAATGGGTATTGGAGTGGAATGTTGGGTGGAGGATCATGGTAA 945 42.54 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSNSSSSTSPTPPNSSSQSQPNFPKKILDHQLPQNPKITPSQDLNLFFPPSNNQDRHRFTTTNNNLSEMILVGSNPSINNATSSSASATTTMSSPPPSQPSVMELLTGMANNNNNNNSSRGLNCFVPMSSVVVPDPSSVYTGGFPDLHDQFKPSLGFSLDGYGVVSTEASNGAGRLMPLPFEDLKQVSNGVEQGKDQQGDDHNSNGYWSGMLGGGSW* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15103796 15105287 + Chy9G170330.1 Chy09g01317 234214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01317 314 MobiDBLite consensus disorder prediction 287 314 - -
Chy09g01317 314 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Chy09g01317 314 MobiDBLite consensus disorder prediction 94 122 - -
Chy09g01317 314 MobiDBLite consensus disorder prediction 84 138 - -
Chy09g01317 314 MobiDBLite consensus disorder prediction 287 308 - -
Chy09g01317 314 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Chy09g01317 314 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Chy09g01317 314 MobiDBLite consensus disorder prediction 178 197 - -
Chy09g01317 314 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 311 - -
Chy09g01317 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 311 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01855 Chy-Chr4:24742847 Chy09g01317 Chy-Chr9:15103796 5.91E-32 dispersed
Chy06g00085 Chy-Chr6:571737 Chy09g01317 Chy-Chr9:15103796 2.24E-17 dispersed
Chy06g01178 Chy-Chr6:10463150 Chy09g01317 Chy-Chr9:15103796 1.16E-39 dispersed
Chy09g01317 Chy-Chr9:15103796 Chy11g01309 Chy-Chr11:19344193 3.49E-41 dispersed
Chy09g01317 Chy-Chr9:15103796 Chy09g01454 Chy-Chr9:16038922 2.84E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18524 PF02701 zf-Dof 5.60E-33 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01317 - - csv:101204617 541.962