Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01319 ATGATTTCAGAAGATCCCGAAATCTGCACCGAAATCCTTGCCGCTCACGGTTGGGACCTCGAATTAGCCGTTTCTTCGTTTACTGCCACCAATTCGGAATCCTCTGCTTCTGCCGCTGCCGATGGTGGTGGGGATGCCCATTTCGACCCACCGACGCGGGAAATTCTTGATAGACCGGAACATCAAGAAAATGCAGCTCCGGCTCCGAGTTTGGCTTGGAAAATCATAACGCTTCCGATTTCTGTGATTTCTGGTAGTTTAGGGCTTGTTTCGGGTGCTGTTGGTCTTGGATTTTGGGCTGCTGGTGGTATTCTTTCGTATTCTCTTGGTGTGATAGGTTTTGGGTCTGGTTCTGGTCGGAATGCTGAGTCGTCGGCTCGGTTGGTTTCTGTATCTGCTGCAGCATCGGAGGCTATTGATTTTGTGTCGGCGTTTGAGAGGGATTATGGGATGATTAGGCCGAGTTTTGTTGGGGAAGGGTTCATGGATGCGTTGCAGCGTTCGAGAAACGCGTTTAAGCTCTTGTTTGTTTACTTGCACTCTCCTGATCATCCGGATACGCCATTTTTCTGTGAGAGGACCTTGTGTTCGGAGACTGTTGCTGCGTTTGTGAATGAGAACTTTGTTTCGTGGGGAGGGAGTATTCGCGCTAGTGAAGGTTTTAAGATGAGTAATAGCTTGAAAGCTTCAAGATACCCTTTTTGTGCTGTGGTTATGGCTGCTACAAATCAGAGGATTGCACTGCTTCAGCAGGTTGAGGGACCAAAAACTGCTGAAGAAATGTTAGTGATTCTGCAGAGAGTTCTTGAAGAAAGTGCTCCTGTTTTGGTTTCGGCAAGGCTTGATGCAGAAGAAAGAAGAAATAACATGCGTTTGAGAGAGGAACAAGATGCAGCTTACAGAGCAGCTCTTGAAGCCGATCAAGCCAGGGAACGACAAAGAAGAGAAGAGCAAGAGCGCCTTGAAAGGGAAGCTGCGGAAGCTGAGAAGAAAAGGAAAGAGGAGGAAGAGGCTCGCGAGAGAGCAGCTCGTGAAGCCGCAGAGAGAGAGGCTGCTTTAGCTAGAATGCGGCAGGAGAAAGCAATGTCACTTGGTGCCGAACCAGAAAAAGGGCCTAATGTTACACAAGTGTTGGTGCGGTTCCCTACTGGAGAACGCAAGGAACGTAGGTTTCACAGTACCGCTTCAATCCAAACTCTCTACGATTACGTTGATTCCTTGGGTTGTTTGGAGGTTGATAGTTATAATCTGGTATCAAACTTCCCTCGAGTTGTTTATGGTGCTGATAAGCTGTCTATGTCCTTGAAAGAAGCTGGACTGCATCCTCAGGCAAGTCTTTTTGTGGACCTAACCTCATGA 1359 47.9 MISEDPEICTEILAAHGWDLELAVSSFTATNSESSASAAADGGGDAHFDPPTREILDRPEHQENAAPAPSLAWKIITLPISVISGSLGLVSGAVGLGFWAAGGILSYSLGVIGFGSGSGRNAESSARLVSVSAAASEAIDFVSAFERDYGMIRPSFVGEGFMDALQRSRNAFKLLFVYLHSPDHPDTPFFCERTLCSETVAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMAATNQRIALLQQVEGPKTAEEMLVILQRVLEESAPVLVSARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAEKKRKEEEEARERAAREAAEREAALARMRQEKAMSLGAEPEKGPNVTQVLVRFPTGERKERRFHSTASIQTLYDYVDSLGCLEVDSYNLVSNFPRVVYGADKLSMSLKEAGLHPQASLFVDLTS* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15111523 15117566 + Chy9G170350.1 Chy09g01319 234216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01319 452 ProSiteProfiles UBX domain profile. 370 448 IPR001012 GO:0005515
Chy09g01319 452 MobiDBLite consensus disorder prediction 306 357 - -
Chy09g01319 452 SMART ubx_3 368 450 IPR001012 GO:0005515
Chy09g01319 452 Pfam UBX domain 370 449 IPR001012 GO:0005515
Chy09g01319 452 CDD UAS 156 271 - -
Chy09g01319 452 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 4 452 - -
Chy09g01319 452 CDD UBX 377 448 - -
Chy09g01319 452 SMART 45neu3 140 266 IPR006577 -
Chy09g01319 452 MobiDBLite consensus disorder prediction 34 54 - -
Chy09g01319 452 Gene3D - 2 38 - -
Chy09g01319 452 SUPERFAMILY Ubiquitin-like 333 448 IPR029071 -
Chy09g01319 452 MobiDBLite consensus disorder prediction 306 356 - -
Chy09g01319 452 Gene3D Glutaredoxin 124 275 - -
Chy09g01319 452 SUPERFAMILY Thioredoxin-like 135 279 IPR036249 -
Chy09g01319 452 Coils Coil 301 359 - -
Chy09g01319 452 Gene3D - 373 451 - -
Chy09g01319 452 Pfam UBA-like domain 5 33 - -
Chy09g01319 452 PANTHER FAS-ASSOCIATED PROTEIN 4 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01319 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101203982 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01319 Chy-Chr9:15111523 Chy12g01253 Chy-Chr12:17145849 1.35E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37