Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01350 ATGAACCTTTGGATGGATTGCCATTCAAATGATGTAAAGGCCAAGCCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACACTCTTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGGGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCATCTCCACAGTCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCAGCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG 789 44.61 MNLWMDCHSNDVKAKPGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPTSEVPGPGTLRSQEEGILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSSPQSHHGTNYWIWRIDPTYRTQDPQRYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSARGSQRVESNVTIGYFPAI* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15344569 15346957 + Chy9G170660.1 Chy09g01350 234247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01350 262 SUPERFAMILY RING/U-box 98 150 - -
Chy09g01350 262 SMART ringv_2 101 148 IPR011016 GO:0008270
Chy09g01350 262 PANTHER ZINC FINGER, RING-CH-TYPE 21 261 - -
Chy09g01350 262 CDD RING_CH-C4HC3_MARCH 102 148 - -
Chy09g01350 262 ProSiteProfiles Zinc finger RING-CH-type profile. 94 154 IPR011016 GO:0008270
Chy09g01350 262 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1 21 261 - -
Chy09g01350 262 Pfam RING-variant domain 102 147 IPR011016 GO:0008270
Chy09g01350 262 MobiDBLite consensus disorder prediction 1 44 - -
Chy09g01350 262 MobiDBLite consensus disorder prediction 14 44 - -
Chy09g01350 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 150 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01350 - - - csv:101210694 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01350 Chy-Chr9:15344569 Chy12g00838 Chy-Chr12:13657421 2.12E-10 dispersed
Chy09g01350 Chy-Chr9:15344569 Chy12g00249 Chy-Chr12:2769552 9.52E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g282 . . . Bda08g00749 . . . . . . Cma02g00955 . Car02g00704 Car15g01201 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01350 . . . . . . . . . . Cmo02g00963 . . . . . . . Bhi12g00062 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004760 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 4 8 2 42