Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01354 ATGATGGAGCCTCCGGAGACGGAGGAGGAAGCCGGTGGTGGTTCTAACAGCGGCAGCGGCGGAAGAGGAGGAGGAGGAGGAGAAGTTGTTGAGAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGTAAATTGAATCGTCTTGTAATTCCAAAGCAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTCCTAAACTTCGAAGATCGTAACGGCAAATCATGGCGATTTCGTTACTCATACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGTTGGAGTCGTTTCGTCAAGGAGAAGCGCCTTGACGCTGGAGATATTGTCTCATTTCAACGTGGAATTGGTGAAATTGGAAGAGATCGTCTTTACATCGACTGGCGTCGTCGTCCTGAACTCCCCATCCACCACTACCCCATCACCACCGCCACCACTGCCATCCGACCGAGCATCGTCATACCAAGCGGCAGTGGTGCTACTGCCGCTTGGGGGCCATTAGTCTGGCAGCCCCTCGGCGTAACGACAGCTGGATACCATCATCAGCCAGCTGCCGTAACGCCGCGGGACCACACACACTTGTCGCGAAACAACAACAACAGTAACAACAGTAACAACAATAACAACAATGGAAATGGTATGTGTTGTCCTTATGGATACGAGAGTAGTAGTGTTGAAACAACAAGTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAAATCATCAAGAAGAGTAATTGTTACTCCAAGATTAGGGGAAGATCAAGAACTGGAATTGGAAATGGATAGGAATTATAATAATTATCAGATGCAGCAAGAGTATTGTAGTAATGGTGGGGGTGGTGCTTCAATGGTGGTCCTTCAAGGAAATTATAGTATGGAAAATCATCATCATCATCATAAATTAAATAGTAATAACAATAATAATTATAGTGAAGAAGATACACCAGTGAAAAAATCAAGATTAAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGAATGTGATTTATTATTATCTACAAACCCCAAAACTACTGCTTCTACCACTCAGTTCCAATTGCCTTCTCCTTCAATTTACAAGTAA 1143 43.92 MMEPPETEEEAGGGSNSGSGGRGGGGGEVVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGIGEIGRDRLYIDWRRRPELPIHHYPITTATTAIRPSIVIPSGSGATAAWGPLVWQPLGVTTAGYHHQPAAVTPRDHTHLSRNNNNSNNSNNNNNNGNGMCCPYGYESSSVETTSSGLVYLRTELGGKSSRRVIVTPRLGEDQELELEMDRNYNNYQMQQEYCSNGGGGASMVVLQGNYSMENHHHHHKLNSNNNNNYSEEDTPVKKSRLRLFGVNMEMESPISSPSSDECDLLLSTNPKTTASTTQFQLPSPSIYK* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15378053 15379195 - Chy9G170700.1 Chy09g01354 234251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01354 380 MobiDBLite consensus disorder prediction 196 219 - -
Chy09g01354 380 MobiDBLite consensus disorder prediction 200 219 - -
Chy09g01354 380 Gene3D - 29 149 IPR015300 -
Chy09g01354 380 MobiDBLite consensus disorder prediction 343 380 - -
Chy09g01354 380 Pfam B3 DNA binding domain 36 140 IPR003340 GO:0003677
Chy09g01354 380 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 19 359 - -
Chy09g01354 380 ProSiteProfiles B3 DNA-binding domain profile. 36 141 IPR003340 GO:0003677
Chy09g01354 380 CDD B3_DNA 34 123 IPR003340 GO:0003677
Chy09g01354 380 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 359 IPR044800 GO:0003700
Chy09g01354 380 SMART B3_2 36 141 IPR003340 GO:0003677
Chy09g01354 380 MobiDBLite consensus disorder prediction 1 29 - -
Chy09g01354 380 SUPERFAMILY DNA-binding pseudobarrel domain 33 142 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00325 Chy-Chr2:2107705 Chy09g01354 Chy-Chr9:15378053 1.19E-13 transposed
Chy02g01404 Chy-Chr2:10923539 Chy09g01354 Chy-Chr9:15378053 1.22E-27 transposed
Chy02g02107 Chy-Chr2:25405981 Chy09g01354 Chy-Chr9:15378053 3.53E-27 transposed
Chy04g02316 Chy-Chr4:27572427 Chy09g01354 Chy-Chr9:15378053 1.40E-12 transposed
Chy09g00618 Chy-Chr9:7677062 Chy09g01354 Chy-Chr9:15378053 1.53E-40 transposed
Chy10g01117 Chy-Chr10:16208218 Chy09g01354 Chy-Chr9:15378053 4.13E-47 transposed
Chy11g01776 Chy-Chr11:24118846 Chy09g01354 Chy-Chr9:15378053 1.84E-64 transposed
Chy07g01218 Chy-Chr7:16986631 Chy09g01354 Chy-Chr9:15378053 3.21E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18526 PF02362 B3 7.40E-29 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01354 - - csv:101211271 666.381