Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01362 ATGGAACCACCCGCTCCTGGATCTGGATCAGGATTACCTGATCCATCTCAATTATTTAGAGTAGTTTCCACACCACCACCACCGCCGCCGTCTTTAACTGTTGATACTACTATAAGTGATTCTCAACAAGTCGAAGCTGCTTCTCCGATTAGTAGCCGACCTCCTGCTGTACCATCTTCTTACGAGGAGCTCATTCGTCTCAGCGGCGGAAGTGGTGGGGGTCAGATGTTGGTTGACGACGATGAAGGTGACGGCCGTAGCGGCGGCGGAAGTGGAGGAAGTGGTGGAAATCGGTGGCCGCGTCAGGAAACACTTGCTTTGCTTAAAATTAGGTCGGAGATGGATTCGGTATTTCGTGATGCTACACTTAAAGGTCCCCTTTGGGATGAAGTCTCCAGGAAGCTAGAGGAAATGGGGTACAGGAGAAATGCGAAGAAATGTAAAGAGAAATTCGAGAATGTTCAGAAATATTACAAACGCACAAAAGAAGGAAGAGGAGGGCGTCAAGATGGCAAGACTTACAAATTCTTTACGCAACTTGAGGCTCTTCACAACGCAAACGTGGCGCCTTCTTCTTCAAATTCATCATTCACACTGCCACACCCGCTTCCTGCAGCAGCAGCAACAACCACCGTTGGCTTTGGGATTAGCAACCCAACTCCAATCTCATCCGTCAAAATTTCATCATCTTCTTCACAAACCCCAATGGGAATCTTTTCTACACCATCTGATCATTTCACTGTCCGACCACCACCCGCCGTCGCTGCTCCTATGGGTGTTAGCTTTTCGTCGAACACCTCATCTGCATCCACTGAAGATGATGATGATAATGAAGATGAGGAGATGGGGTTTGATGTTGACCTTGAAGGGGAGCCGGAGAATGTAGCCGGAAGTAGTAGGAAACGGCGGAGAGGGGTGATTAAAGGGAATAATGATGAATGGAGAAGTAGTAGTAGTAGCAGTGATCATAAGATGATGATGGAGTTTTTTGAGGGTTTGATGAAACAAGTGATGGAGAAACAAGAAGTTATGCAACAGAAGTTTTTGGAAGCGATTGAGAAAAGGGAACAAGATAGGATGGTTAGAGAAGAGAATTGGAAAAAAGAAGAGATGTTTAGGTTGAGTCAAGAACAAGAAAGAATGGCTCAAGAACGGACAATTTCTGCTTCTAGAGATGCTGCCATTATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTTTCAGCCCCACAAGTGCCTCTGCCTGTACCTATGGCTGTGTCTGTACCTATGCCTACGCCTGTGCCAGCGCCACTATCTCCTGTCTCCTCTCATCAGCCAATGCAACCACAAACTCTGCCACACCTTCAGAATCACCCGCCTTCAAATACAATCCCATTGGAACAACCAAAACCAAAATTTCAGGAAACTAGTCAAGGTGGAGATGGATCTTCAGAACCCATTTCATCAAGATGGCCAAAGCAAGAAGTTTTAGCTCTAATAAAGCTGAGAGGTGGGCTTGAATCGAAGTATCAAGAAACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGATAAAGATGGGTTACAAGAGAAGTGCTAAAAGATGCAAAGAGAAATGGGAGAATATCAATAAGTACTTCAAGAAAGTCAAAGAAAGCAACAAAAAACGCCGCGAGGATTCTAAAACTTGCCCTTATTTCAATGAACTTGATGCTCTTTATCGCAAAAAAATCCTTTCTACTACTGCTGCTGCTACTGCTTCTGATCATTCTGGTTCTTTTGAACAAAACCCAATTCAAAATATGGAAATTATTCCTCCATCAACAACTACAACAACAGATCATCATCTTCAATCTCAACCTCATTCTTCTTCCATTCCACAAGGTTTATCCGCTACTCTTTTTGGTGAAGGAACTGAAGAACAACAACAACAACCAACATCCACGAAGGTAAAACTCGTTAACCCATGA 1968 44.16 MEPPAPGSGSGLPDPSQLFRVVSTPPPPPPSLTVDTTISDSQQVEAASPISSRPPAVPSSYEELIRLSGGSGGGQMLVDDDEGDGRSGGGSGGSGGNRWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSRKLEEMGYRRNAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANVAPSSSNSSFTLPHPLPAAAATTTVGFGISNPTPISSVKISSSSSQTPMGIFSTPSDHFTVRPPPAVAAPMGVSFSSNTSSASTEDDDDNEDEEMGFDVDLEGEPENVAGSSRKRRRGVIKGNNDEWRSSSSSSDHKMMMEFFEGLMKQVMEKQEVMQQKFLEAIEKREQDRMVREENWKKEEMFRLSQEQERMAQERTISASRDAAIIAFLQKFTGQTIQFSAPQVPLPVPMAVSVPMPTPVPAPLSPVSSHQPMQPQTLPHLQNHPPSNTIPLEQPKPKFQETSQGGDGSSEPISSRWPKQEVLALIKLRGGLESKYQETGPKGPLWEEISAGMIKMGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILSTTAAATASDHSGSFEQNPIQNMEIIPPSTTTTTDHHLQSQPHSSSIPQGLSATLFGEGTEEQQQQPTSTKVKLVNP* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15463264 15465375 - Chy9G170780.1 Chy09g01362 234259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01362 655 MobiDBLite consensus disorder prediction 257 320 - -
Chy09g01362 655 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 31 417 - -
Chy09g01362 655 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 438 615 - -
Chy09g01362 655 ProSiteProfiles Myb-like domain profile. 97 155 IPR001005 -
Chy09g01362 655 MobiDBLite consensus disorder prediction 271 288 - -
Chy09g01362 655 MobiDBLite consensus disorder prediction 432 486 - -
Chy09g01362 655 MobiDBLite consensus disorder prediction 1 101 - -
Chy09g01362 655 CDD GT1 97 162 - -
Chy09g01362 655 ProSiteProfiles Myb-like domain profile. 479 543 IPR001005 -
Chy09g01362 655 MobiDBLite consensus disorder prediction 439 486 - -
Chy09g01362 655 MobiDBLite consensus disorder prediction 603 655 - -
Chy09g01362 655 MobiDBLite consensus disorder prediction 294 310 - -
Chy09g01362 655 MobiDBLite consensus disorder prediction 34 55 - -
Chy09g01362 655 Gene3D - 99 160 - -
Chy09g01362 655 Gene3D - 487 548 - -
Chy09g01362 655 PANTHER - 31 417 - -
Chy09g01362 655 PANTHER - 438 615 - -
Chy09g01362 655 SMART sant 95 157 IPR001005 -
Chy09g01362 655 SMART sant 483 545 IPR001005 -
Chy09g01362 655 Pfam Myb/SANT-like DNA-binding domain 97 183 IPR044822 -
Chy09g01362 655 Pfam Myb/SANT-like DNA-binding domain 485 572 IPR044822 -
Chy09g01362 655 CDD GT1 485 550 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01362 - - - csv:101212243 1156.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01865 Chy-Chr2:21124927 Chy09g01362 Chy-Chr9:15463264 1.16E-08 dispersed
Chy03g00405 Chy-Chr3:5822256 Chy09g01362 Chy-Chr9:15463264 5.49E-15 dispersed
Chy04g02260 Chy-Chr4:27260336 Chy09g01362 Chy-Chr9:15463264 1.80E-08 dispersed
Chy09g01362 Chy-Chr9:15463264 Chy11g00062 Chy-Chr11:652966 4.51E-18 dispersed
Chy09g01362 Chy-Chr9:15463264 Chy02g02654 Chy-Chr2:29570673 1.10E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18528 PF13837 Myb_DNA-bind_4 4.30E-22 CL0123 Chy TF