Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01393 ATGATAATAAAGTTAGGTTTAAATTACAGAAAGAACCAACAGAAGAGAAGGGTATGCCATGTTACTGCAGATAACCTCTCGACGGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCGTATCCAAGCAGCTCAAAAGGGTGTGGAGCAAGAAAGCAAGTTGAACGCAGCAACGCCGATCCCGAAACTTTTACCATCACATACACCGGCGATCACTCTCATCCCCGTCCAGCTCACCGTAATTCCCTTGCCGGAAGTTCCCGCAACAGGTCCTCCTCCTCCTCCCGACACCCCACCATGGGAGATTCCGATCCCTCGATGATGACCGCCTCCGTTCTCCTACCCTCCTCCTCTTCCCCTGCAGCTTCTCCCATCACACCGCTGAACGATTACGATTCCACCATCGGCGAGAAAGATGGAGAGATGTTTGAAGATATGCCGATTGATAGTGACGATGACGACGACGATGACGATATTCTGATTCCGAACTTGACGGTGAGAGATGAAATCTTTGTTGGGTTTGATGAGGTTGGGAGGGGACGGTCATCGTAA 567 50.09 MIIKLGLNYRKNQQKRRVCHVTADNLSTDMWAWRKYGQKPIKGSPYPSSSKGCGARKQVERSNADPETFTITYTGDHSHPRPAHRNSLAGSSRNRSSSSSRHPTMGDSDPSMMTASVLLPSSSSPAASPITPLNDYDSTIGEKDGEMFEDMPIDSDDDDDDDDILIPNLTVRDEIFVGFDEVGRGRSS* 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15662956 15663705 + Chy9G171090.1 Chy09g01393 234290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01393 188 MobiDBLite consensus disorder prediction 85 135 - -
Chy09g01393 188 Pfam WRKY DNA -binding domain 29 80 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy09g01393 188 ProSiteProfiles WRKY domain profile. 22 82 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy09g01393 188 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 182 IPR044810 GO:0003700
Chy09g01393 188 SUPERFAMILY WRKY DNA-binding domain 22 82 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy09g01393 188 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 10 182 - -
Chy09g01393 188 Gene3D WRKY domain 11 75 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy09g01393 188 MobiDBLite consensus disorder prediction 39 162 - -
Chy09g01393 188 SMART WRKY_cls 27 81 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01393 Chy-Chr9:15662956 Chy12g00450 Chy-Chr12:5585747 4.08E-29 dispersed
Chy06g00146 Chy-Chr6:929471 Chy09g01393 Chy-Chr9:15662956 6.60E-36 wgd
Chy07g01200 Chy-Chr7:16850218 Chy09g01393 Chy-Chr9:15662956 3.52E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18530 PF03106 WRKY 4.80E-16 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01393 K13425 - csv:101216181 297.36