Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01399 ATGGAACAGAAGCACATTTTTCTATCTGCTTTGGGTGTTGGTGTTGGAGTAGGGGTTGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGGAAATGGGTTGGAGGGAATGGCTCTTCTGATGAAATTACAGGCCAAAAGATTGAACAGGAGCTGATCAGGCAGCTGCTTGATGGAAAAAACAGCAATGTAACTTTTGCTGAGTTTCCTTATTATCTAAGTGAAAGGACTCGAGTCCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGTGACATCTCCAAGCACACCAGGAATCTTTCACCAGCAAGTCGGGCTATTTTGCTTTCTGGACCAACAGAACTTTACCAGCAGATGCTTGCCAAGGCACTGGCGCATCACTTTGAGTCGAAGTTGCTGTTGTTAGACGTCTCTGACTTTTCTTTAAAGATGCAGAGCAAATATGGTTGTCCCAAGAAAGAATCTTCATTCAGGAGGTCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGTTTGGGATTCCTTTTCAATTCTTCCTACAAGTGGAAATACTAGGGGAAATCTCAGAAGGCAAAGCAGTACCACCGACATTCAATCGAGATGCTCGGATAGCTCGTCTAATCTTCCAAAGCTTCGGAGAAATGCTTCTGCTGCTTCTGATATCAGTAGTATCTCATCAAACTATGGTTCAACAAACTCAGCTTCCGCCAAGCGCACAAATACTTGGTGCTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCCTGGTATCGGTATCAGAAACTACTTCCATAATTTTGTATCTGAGAGACGTTGAGAGACTTCTTCTTAAGTCACAGAGGATATACAATCTGTTCCATAGATTTCTGAACAAGCTCTCAGGATCAATTTTAGTCCTTGGTTCTCGAATGGTTGATGTTGAAAATGATTGTGGGGATGTTGACGACAGATTGACCAATTTATTCCGGTATAGTGTTGAAATTCGACCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGATATGAAGATGATTCAGTTCCAAGATAATAAAAACCACATCGCTGAAGTACTTGCTGCAAATGATCTTGAATGTGATGATCTTGGTTCAATTTGCCATGCAGACACTATGGTTCTCAGTAATTATATTGAAGAAATTGTCGTGTCGGCGATATCGTATCATTTGATGAACAACCGGGATCCAGAATACCGAAATGGAAAACTTCTGATATCTTCCAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGCAATAGGGAAGGAAAAGACACTCTAAAGCTTGAGACAAATGCAGAATCATCAAAGGAAGCCCAAAGGGACGAAGCTGTTGGGGCAAAGACTGAATCTAAATCTGAAAATCCAGCTACAGAGGCAGAGAAATCTGTTCCCATAGTGAAAAAAGATGTTGAAAATGTGCCTCCACAAAAAGCACCTGAAATTCCTCCTGACAACGAATTTGAAAAGCGTATAAGACCTGAAGTTATCCCTGCAAATGAAATTGGGGTCACATTTGCAGACATTGGTGCTATGGATGAAATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAGGGCGGACTTCTTAAACCTTGTAGGGGCATCCTGCTTTTCGGTCCTCCTGGAACGGGTAAAACAATGTTGGCAAAGGCCATTGCTAACGAAGCCGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGAGAAGATGAAAAGAATGTCCGTGCATTGTTTACGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGATGAAGTCGATAGCATGCTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTGACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCGACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGTCGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTGTGTGTGACTGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAGGAGAGATTGAAAGATTTGGAAAAGAAGCAGAGAGAGAAAAAGGAGAAGGAGAAGCAGAAGGAGGAGAAGGAGGAGGAGATGGAAAAGGAGAAGCAGAAGGAGGAGAAGGAGACTGAAACCAAGAATGAAACCGGGAACGAGAATGAGAAGGAGAATGAAAATAATTCGGACGAAGTTACAGGTACAAAAGAGACAGAACAAGATAAACAAGCGATCATTCTGAGGCATCTAAATATGGATGATATGAGGCAGGCCAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAACTTACATACTTTTTATAG 2616 42.32 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVGGNGSSDEITGQKIEQELIRQLLDGKNSNVTFAEFPYYLSERTRVLLMSAAYVHLKHCDISKHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSSVWDSFSILPTSGNTRGNLRRQSSTTDIQSRCSDSSSNLPKLRRNASAASDISSISSNYGSTNSASAKRTNTWCFDEKLFLQSLYKVLVSVSETTSIILYLRDVERLLLKSQRIYNLFHRFLNKLSGSILVLGSRMVDVENDCGDVDDRLTNLFRYSVEIRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNREGKDTLKLETNAESSKEAQRDEAVGAKTESKSENPATEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQREKKEKEKQKEEKEEEMEKEKQKEEKETETKNETGNENEKENENNSDEVTGTKETEQDKQAIILRHLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL* 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15691286 15697670 - Chy9G171150.1 Chy09g01399 234296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01399 871 Gene3D - 517 781 IPR027417 -
Chy09g01399 871 MobiDBLite consensus disorder prediction 184 214 - -
Chy09g01399 871 SMART AAA_5 554 691 IPR003593 -
Chy09g01399 871 ProSitePatterns AAA-protein family signature. 661 680 IPR003960 GO:0005524|GO:0016887
Chy09g01399 871 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 871 - -
Chy09g01399 871 Gene3D - 690 774 - -
Chy09g01399 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 761 IPR027417 -
Chy09g01399 871 MobiDBLite consensus disorder prediction 438 480 - -
Chy09g01399 871 Coils Coil 743 790 - -
Chy09g01399 871 Pfam ATPase family associated with various cellular activities (AAA) 558 688 IPR003959 GO:0005524|GO:0016887
Chy09g01399 871 Pfam AAA+ lid domain 710 753 IPR041569 -
Chy09g01399 871 CDD AAA 524 689 - -
Chy09g01399 871 MobiDBLite consensus disorder prediction 758 814 - -
Chy09g01399 871 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 871 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01399 - - - csv:101216426 1548.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01399 Chy-Chr9:15691286 Chy12g01173 Chy-Chr12:16594668 1.14E-11 dispersed
Chy03g00111 Chy-Chr3:1059023 Chy09g01399 Chy-Chr9:15691286 6.35E-66 transposed
Chy07g01090 Chy-Chr7:15830145 Chy09g01399 Chy-Chr9:15691286 8.12E-06 transposed
Chy02g00143 Chy-Chr2:1047285 Chy09g01399 Chy-Chr9:15691286 6.05E-62 transposed
Chy07g01193 Chy-Chr7:16782405 Chy09g01399 Chy-Chr9:15691286 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75