Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01411 ATGGAGCAAGACAACGAAGAGGTGAAGACGTTTCAGAGCTTAGGGATATGTGAGCAATTGGTTGAGGCATGTGACAGTTTAGGCTGGAAAAATCCATCAAAGATTCAGGCGGAGGCTATTCCTCATGCCCTAGAAGGAAAGGATTTAATTGGACTTGCACAAACTGGTTCTGGGAAAACTGGAGCTTTTGCTCTGCCCATTTTGCAAGCCCTATTGGAAGCTCCCCAAGCATTTTTTGCCTGTGTGCTCTCCCCCACGAGGGAGCTTGCAATTCAGATAGCTGAGCAGTTTGAAGCTTTAGGGTCTGGCATCGGTATTAAGTGTGCAGTGCTCGTCGGAGGGGTAGACATGGTGCAGCAAGCCATTAACCTGGCAAAACGGCCACATATTGTTGTTGGGACACCTGGACGCCTTGTGGACCATCTAACCAATACAAAGGGGTTTTCCCTGCGCACATTGAAATATCTTGTCCTTGATGAGGCAGATAGGTTATTGAATGAAGACTTCGAAAAGTCAATAGATGAAATTTTGAATGAAATTCCTCGTGAGAGGAGAACATATCTATTTTCTGCTACTATGACCAAAAAGGTTCGGAAACTTCAAAGAGCATGCTTAAGGAACCCTGTTAAGATTGAAGCAGCAACCAAATATTCCACAGTCGACACATTGAAGCAGCAATATTGTTTTATCCCTGCGAAATATAAGGAGTGTTATCTTGTCTATATCTTGACTGAGATGTCTGGTTCAACCTCAATGGTCTTCACTCGCACTTGTGACGCCACTCGCCTCCTGTCATTGATTCTTCGAAATCTTGGATTGAGAGCCATACCCATAAGTGGTCAGATGACCCAGGCGAAGCGACTGGGAGCCTTAAATAAGTTCAAGGCTGGAGAGTGCAATATTCTCATTTGCACTGATGTGGCTAGCAGAGGACTTGATATTCCATCTGTGGATATGGTCATAAATTATGATATTCCTTCAAATTCCAAGGATTACATACATAGAGTTGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCCATTTCGTTGGTTAATCAGTATGAGTTAGAGTGGTATATACAGATAGAGAAGCTCATAGGGAAAAAACTGCCGCAGTTTTCCGCCCAAGAAGAGGAAGTTTTGATGCTGTTAGAGCGTGTGACAGAGGCAAAGAGAATATCTCTCATGAAAATTAAAGAAACTGGTGGTAAAAAGAGGAGGCGAGGTGGAGATGACGACGATGACAACGACAATAATGATGTTGAGAAGTATCTGCGCCTCAAGACTGGAAAGGGTGGTGGGAAAATGTCCAAGAATGGTAAAACATCAAAGAAGTTGAAAAGAAAATGA 1353 43.68 MEQDNEEVKTFQSLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEAPQAFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHIVVGTPGRLVDHLTNTKGFSLRTLKYLVLDEADRLLNEDFEKSIDEILNEIPRERRTYLFSATMTKKVRKLQRACLRNPVKIEAATKYSTVDTLKQQYCFIPAKYKECYLVYILTEMSGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLMLLERVTEAKRISLMKIKETGGKKRRRGGDDDDDNDNNDVEKYLRLKTGKGGGKMSKNGKTSKKLKRK* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15776838 15782170 - Chy9G171270.1 Chy09g01411 234308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01411 450 MobiDBLite consensus disorder prediction 402 450 - -
Chy09g01411 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 364 IPR027417 -
Chy09g01411 450 SMART ultradead3 28 226 IPR014001 -
Chy09g01411 450 MobiDBLite consensus disorder prediction 402 430 - -
Chy09g01411 450 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 211 IPR014001 -
Chy09g01411 450 SMART helicmild6 262 343 IPR001650 -
Chy09g01411 450 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 157 165 IPR000629 -
Chy09g01411 450 Gene3D - 217 389 IPR027417 -
Chy09g01411 450 PANTHER RNA HELICASE 3 420 - -
Chy09g01411 450 CDD DEADc_DDX47 10 212 IPR044765 GO:0005524
Chy09g01411 450 Pfam DEAD/DEAH box helicase 34 200 IPR011545 GO:0003676|GO:0005524
Chy09g01411 450 PANTHER BNAC02G41920D PROTEIN 3 420 - -
Chy09g01411 450 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 382 IPR001650 -
Chy09g01411 450 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Chy09g01411 450 Pfam Helicase conserved C-terminal domain 238 343 IPR001650 -
Chy09g01411 450 Gene3D - 1 214 IPR027417 -
Chy09g01411 450 CDD SF2_C_DEAD 223 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01411 K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3 [EC:3.6.4.13] - csv:101219259 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00123 Chy-Chr2:895144 Chy09g01411 Chy-Chr9:15776838 4.63E-52 dispersed
Chy02g01772 Chy-Chr2:19168858 Chy09g01411 Chy-Chr9:15776838 1.43E-72 dispersed
Chy04g00517 Chy-Chr4:5087206 Chy09g01411 Chy-Chr9:15776838 2.12E-80 dispersed
Chy05g00280 Chy-Chr5:2732586 Chy09g01411 Chy-Chr9:15776838 9.19E-62 dispersed
Chy06g01968 Chy-Chr6:23702390 Chy09g01411 Chy-Chr9:15776838 3.42E-47 dispersed
Chy09g01411 Chy-Chr9:15776838 Chy11g01038 Chy-Chr11:14847915 1.51E-120 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g348 . . . . . . . . Cmo06g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00080 Chy09g01411 . . . . . . . . . . . . Cma06g01089 . Car06g00924 . Cpe08g00529 . . . . . . . . Cla01g00071 Cam01g0070 Cec01g0071 Cco01g0071 Clacu01g0071 Cmu01g0072 Cre09g2437 Lsi09g00051 . . Cme09g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005266 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 2 40