Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01423 ATGTTGAGGGTGTCATCATCTTTGGGAACATGGAAGCACAATCGGTGGAAAGCTTGCTTGGAACTATTCTCGACTCTTTGTGAAGGTTTACACACTAAAAACTCCAATATTATTTCTACCAATATTTATATAAGTCGTCATGTAAGAAATGGTCATCTTGATCTTGCTCGAACTCTGTTCGATGAAATGCCAGTAAGAAGTGTTGTCTCATGGAATATCATGATTTCTGGACACTCCAAATTTGGAAAGTATAGTGAAGCTCTCAATCTGGCTTCAGGGATGCATTGCAACAACGTAAAATTAAATGAGACGACCTTTTCTAGTTTGTTGAGTACTTGTGCACATTCAGGGTGTACATCTGAGGGAAAACAATCTCATTGTTTGGTTTTAAAATCTGGGTTGCAGATATTTGAGCGTGTTGGAAGTGCATTATTGTATTTCTATGCAAATATCAATGACATTAGTGGAGCCAAGCAAGTCTTTGATGAGCTGCATGATAAAAATGATTTATTATGGGACTTGATGCTTGTAGGGTATGTGAAATGTAACTTAATGGATGATGCTTTTGATCTATTTATGAAAATTCCAACTCGGGATGTGGTGGCATGGACTACTATGATATCAGGGTATGCAAGAAGTGAGCATAACTGTAAGAGGGGATTGGAATTATTCTGCTCCATGCGGATGAGTGGTGAGGTTGAACCTAATGAGTTCACTTTTGATTCTGTTGTAAGAGCTTGTGGGAGAATGAGATATTTGAGTTGGGGGAAGGTTGTTCATGGGATTTTGACTAGATACGGATTCCACTTCGATCATTCTGTTTGTAGTGCACTGATTTTATTTTATTGTCAGTGTGAAGCTATTGAGAGTGCCAAGGCAGTTTATGATAGTATGGAAAGACCGTGTTTAAAGGCTTCAAATTCTCTTCTAGAGGGGTTAATATTAGCAGGAAGAATTAATGATGCTGAAGAATTTTTTTGTAAGTTAAGAGAAAAAAATCCGGTTTCATATAATTTGATGCTTAAAGGGTACGCAATGAGTGGTAGAATTGAAGGATCAAAGATATTATTTGAAAGAATGACTCATAAAACTACCAGTTCAGTCAACACTATGATATCCGTGTATTCCAGGAATGGTGAAATGGACAAAGCTTTCAAATTATTTGAGTCAGTGAAGAGTGAAGGAGATCCTGTGACATGGAACTCAATGATATCAGGTTGTATTCAAAATCATCAGCATGAAGGGGCGTTGAAACTCTATATAACCATGTGCAGAACATCAGTTGAACGCTCTAGATCAACATTCTCTGCTCTGTTTCAAGCATGCACATGCTTAGAATATATTCAATTGGGTCAAGCACTACATGTGCATGCAATCAGGGAAGCCTTTGACTCAAATGTTTATGTTGGAACATCTCTCATAGATATGTACGCAAAATGTGGGAGCATCTATGATGCTCAAACTTCGTTTGCCAGTGTTTGTTTCCCTAATGTGGCAGCTTTTACCGCTCTAATTAATGGATATGCGCATCATGGACTTGGGATTGAAGCATTCTCAGTCTTTGACGAGATGTTAAAACACAAAGTTCCGCCAAATGGAGCTACTCTTTTGGGGATTCTTTCTGCATGTAGTTGTGCTGGTATGGTAAAGGAAGGAATGACAGTTTTCCATTCAATGGAAAAATGTTATGGTGTGATTCCAACCCTAGAGCACTATGCGTGTTTGGTGGATCTTCTTGGACGTTCGGGACGTCTGTATGAAGCTGAAGCATTTATTAGATGCATGCCGATTGAAGCTGATAGAGTTATTTGGGGAGCTCTGCTGAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGTGAGAGTGTGGCTAAGAAGGTGCTTAGTTTGGACCCCAAAGCAATATCTGCTTATATTATTCTGTCTAATATATACGCTAAATTAGGGAAGTGGGTAGAGAAGATCAATGTGAGGAGGCAATTGATGAGCTTAAAAGTGAAAAAGATTCGTGGTTGTAGCTGGATCGATGTAAATAATAAAACTTACGTTTTCTCTGCAGGAGATAGGTCTCATCCTAACTGTAATGCAATTTATTCAACTTTAGAGCATCTATTAGCAAATGTATCTCCATAG 2133 38.49 MLRVSSSLGTWKHNRWKACLELFSTLCEGLHTKNSNIISTNIYISRHVRNGHLDLARTLFDEMPVRSVVSWNIMISGHSKFGKYSEALNLASGMHCNNVKLNETTFSSLLSTCAHSGCTSEGKQSHCLVLKSGLQIFERVGSALLYFYANINDISGAKQVFDELHDKNDLLWDLMLVGYVKCNLMDDAFDLFMKIPTRDVVAWTTMISGYARSEHNCKRGLELFCSMRMSGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTRYGFHFDHSVCSALILFYCQCEAIESAKAVYDSMERPCLKASNSLLEGLILAGRINDAEEFFCKLREKNPVSYNLMLKGYAMSGRIEGSKILFERMTHKTTSSVNTMISVYSRNGEMDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCFPNVAAFTALINGYAHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACLVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRQLMSLKVKKIRGCSWIDVNNKTYVFSAGDRSHPNCNAIYSTLEHLLANVSP* 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15834438 15836570 - Chy9G171390.1 Chy09g01423 234320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01423 710 Pfam E motif 616 676 IPR046848 -
Chy09g01423 710 PANTHER BNACNNG07920D PROTEIN 34 194 - -
Chy09g01423 710 Gene3D Tetratricopeptide repeat domain 473 701 IPR011990 GO:0005515
Chy09g01423 710 PANTHER - 195 364 - -
Chy09g01423 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Chy09g01423 710 Gene3D Tetratricopeptide repeat domain 361 453 IPR011990 GO:0005515
Chy09g01423 710 Gene3D Tetratricopeptide repeat domain 271 360 IPR011990 GO:0005515
Chy09g01423 710 Gene3D Tetratricopeptide repeat domain 126 254 IPR011990 GO:0005515
Chy09g01423 710 Gene3D Tetratricopeptide repeat domain 8 125 IPR011990 GO:0005515
Chy09g01423 710 PANTHER - 34 194 - -
Chy09g01423 710 Pfam PPR repeat 307 333 IPR002885 -
Chy09g01423 710 Pfam PPR repeat 40 66 IPR002885 -
Chy09g01423 710 Pfam PPR repeat 367 395 IPR002885 -
Chy09g01423 710 Pfam PPR repeat 335 361 IPR002885 -
Chy09g01423 710 Pfam PPR repeat family 198 247 IPR002885 -
Chy09g01423 710 Pfam PPR repeat family 496 543 IPR002885 -
Chy09g01423 710 Pfam PPR repeat family 397 442 IPR002885 -
Chy09g01423 710 Pfam PPR repeat family 67 114 IPR002885 -
Chy09g01423 710 PANTHER BNACNNG07920D PROTEIN 96 330 - -
Chy09g01423 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 234 IPR002885 -
Chy09g01423 710 PANTHER BNACNNG07920D PROTEIN 366 707 - -
Chy09g01423 710 TIGRFAM PPR: pentatricopeptide repeat domain 398 429 IPR002885 -
Chy09g01423 710 TIGRFAM PPR: pentatricopeptide repeat domain 367 395 IPR002885 -
Chy09g01423 710 TIGRFAM PPR: pentatricopeptide repeat domain 69 103 IPR002885 -
Chy09g01423 710 TIGRFAM PPR: pentatricopeptide repeat domain 500 532 IPR002885 -
Chy09g01423 710 TIGRFAM PPR: pentatricopeptide repeat domain 539 568 IPR002885 -
Chy09g01423 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Chy09g01423 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Chy09g01423 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Chy09g01423 710 PANTHER BNACNNG07920D PROTEIN 195 364 - -
Chy09g01423 710 PANTHER - 96 330 - -
Chy09g01423 710 PANTHER - 366 707 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01423 - - - csv:101215850 1386.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01423 Chy-Chr9:15834438 Chy02g02319 Chy-Chr2:27202193 3.01E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36