Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01430 ATGACCTATCTGCAGGAGAAAATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAATGGGGTTATATTCTGCAGATAACACTTTAAATGCTGGAAAGATTGGGACAAGAACTGACTTAGTTTCAGAGAAGCCTCATAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAGTCATCTTCTTTCAATAAATTTATGTCCAAAGGTTTTGGAACTGGTCAAAAGGTGCTTGACCCACAGGGACCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCATGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATGACGATAAGAAATGTCTTGGGTTAGATAATAAGATGGAGATTACGGCTAGTGTGTTACGTTCATTCACCGACATATTCTATATATTACATATTGTTTTCCAATTTCGTACGGGATTTATTGCCCCTTCTTCTCGGGTGTTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAAAGATATCTTTCATCATACTTTTTGATTGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATCATTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATTAGAATCTATCCATTATATAAAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGTTGGCAAGTCATGTCTTTGGAGCATTCTGGTACTTGTTTTCTATAGAACGAGAAACTACCTGCTGGCAGAGGGCTTGCAATAAGACGGGCTGTGTTTCTAATGCACTATATTGTGATGCTGATGTCAGTCAAAGAAACAACGCATTTTTAAATGTTTCATGCTCTCTAGTTGAAGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTAAATCTGGTGTCGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGATTCAAGGGATTGTTTGGGATGGATAGTCAATGGAGGACATGGGCAGCATGTTTTATACAAGCAGCATGGCGCCGATACCGCAGAAAGAAGCATGAACAGACTCTCTTGGAAGAAGAAAACAGGTTAAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCCACCATCTATGCATCTAGATTTGCAGCTAACATCCTTAGAACGATTCGACGGACAAGCTCACGGAAGGCCAGAATTCCAGAGAGAATACCACCATTGTTGCTTCAGAAACCAGCAGAACCAGATTTTACTTCTGAAGAGAATAGTTTATAG 1413 39.56 MTYLQEKIVRFQDWSSDKTSMGLYSADNTLNAGKIGTRTDLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSKGFGTGQKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDNKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIIIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQRACNKTGCVSNALYCDADVSQRNNAFLNVSCSLVEDNPPFDFGIFLDALKSGVVGSMNFPQKFFYCFWWGLRNLRFKGLFGMDSQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPLLLQKPAEPDFTSEENSL* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15884045 15889438 + Chy9G171460.1 Chy09g01430 234327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01430 470 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 364 - -
Chy09g01430 470 Pfam Ion transport protein 94 366 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy09g01430 470 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 364 - -
Chy09g01430 470 Coils Coil 391 411 - -
Chy09g01430 470 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 371 466 - -
Chy09g01430 470 SUPERFAMILY Voltage-gated potassium channels 85 362 - -
Chy09g01430 470 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 371 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01238 Chy-Chr6:11293876 Chy09g01430 Chy-Chr9:15884045 3.22E-88 dispersed
Chy06g01240 Chy-Chr6:11326830 Chy09g01430 Chy-Chr9:15884045 5.51E-175 dispersed
Chy08g00837 Chy-Chr8:15861438 Chy09g01430 Chy-Chr9:15884045 1.27E-64 dispersed
Chy09g01430 Chy-Chr9:15884045 Chy11g00817 Chy-Chr11:11708053 8.88E-90 dispersed
Chy04g01499 Chy-Chr4:21627496 Chy09g01430 Chy-Chr9:15884045 4.89E-117 transposed
Chy05g00992 Chy-Chr5:14586237 Chy09g01430 Chy-Chr9:15884045 5.40E-130 transposed
Chy06g00103 Chy-Chr6:680407 Chy09g01430 Chy-Chr9:15884045 1.05E-09 wgd
Chy06g01237 Chy-Chr6:11278957 Chy09g01430 Chy-Chr9:15884045 6.20E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01430 K05391 - csv:101221781 708.368