Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01443 ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAAATCGCGCTTCACCGATAGTACATCGTCCTCTCCTTTATCGAGCTATATCGTTTCATCCCGAGCTGAGGCGAGCTTTTGTTACTGTAGCTCCTCAACTCTCTTCAATGGCCACTTTCCTTCTTCTCTCTTCTCCATCTTACAGTCATTGCATTTGCAAAAGGGCATCAATCACATGCTCCTCAGTTTACCTTCAGAAATGTTATATCAAGCTTTATGCGGTTCCTGTTGGAGTTTTTTCTTGTTTCTATGCATCAACACCTTCTGCTTCTAGTAGAGCTGCTTTTGGCGCTGAAAGGAAGCACGCTTCTTCTGCGTTCACTCCAATTGGATATCAAAGGTCTGATGACATGCACTACCTTACTGATTGGAACACAGTGGCTGAATTTGAAGTTCAGTTGGAAGAATTACTCAATGAAGTGAGAATGTTGACCATGAGCGGGAGGAAGAATGATGCTGTAGAGCTACTTCAAGCTAATTATGAAGCTGTAAAAGAACAAATGGAATCAGGCGCCGTTGGCATTGAACAAGCTGCTGTTCTTGACATCGTGGCTTTGGGGTATTTAACTGTTGGAGACTTGAAGTTTGTTGCTTCTGTGTTGGATATATTGAACAAGGTTGTTGACAGTCTGACGGACGGTGAACCCTTTCTGGATTCAGTGCTTCTGCATATGGGGAGCATGTACTCAACCTTAAAAAAGTTTGAGAAATCAATATCTGCGTACAAGAGAGCTATTGATATCATGGAGAAAAAATTTGGAGAAGACAGTAGCTTTCTTATCACTCCAATTTTAGGGATGGCTAAAGTTCTTGGTACCATTGGAAGAGCTGGAAAGGCAGTAGAGTGCTACAATCGTGCAATTTCACTTCTGGAATCAAGCAGAGGCTTTGAGAACGAGGATTTGGTTTTACCTTTGATTAGTCTGGGCAATCTTATGCTCAAAGAAGGAAAAGGCAAGGATGCAGAAACGTGTTTTGCAAGGATTGTGAACATATATGAAAAGTTATATGGAGAGAAAAATGGAAAAGTCGGAATGGCTATGTATTCTCTGGCTAATGCAAAATGTGCAAGAGGGGAAGCAGACGAAGCTGTTACCTTATGTAGAAGAGCTTTGGAGATTATCAAGGATTCAAATGATATGGCTTTAGATGACAGCACCATTGAGAAGATGAGGATTGATTTGGCAGAACTATTGCATGTTCTAGGAAGAGCGAATGAAGGCAGAGAACTTCTAGAAGAGTGTTTGTTGAACAATGAAAGGTTGAAAGGAAAAGAGCATCCCAGCTCAGTGAAGCACCTTGTAAACCTTGCCGCTTCTTATTCACGGTCAAAGAATTATGTGGAGGCTGAGCGTTTGTTGCGAATTGGATTGGATATTATGATAAAGGCAGTGGGATCTGATGATCAATCAATTACAGTCCCAATGTTGAATCTTGCTGTCACTCTTTACAATCTAAAACAGGACAATGATGCTGAGCAACTTGCGCTTGAAGTCTTGCGAATAAGGGAAAATGCTTTTGGAAAAGATTCACTTCCTGTTGGTGAAGCTCTAGATTGTTTGGTTTCGATTCAGAGCAGGCTAGGGAAGGATGAAAGTGAGCTACTGAAGCTGCTGAAGAGAATTCTTAGAATCCAGGAGAAAGAGTTCGGGGAAGATGGTAAAGAGGTCATCGACACCCTCAAGAAAATAGTCTTCTGCATGGACAAACTGGGAATGAAAGATGAGAAATTTCTCCTTCAAAAACGACTATCCATGCTGCGGATGAAATTCAAGAACCAGATGCGATACTAA 2019 42.25 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRSGRRERPLAPPVRLAWSNRASPIVHRPLLYRAISFHPELRRAFVTVAPQLSSMATFLLLSSPSYSHCICKRASITCSSVYLQKCYIKLYAVPVGVFSCFYASTPSASSRAAFGAERKHASSAFTPIGYQRSDDMHYLTDWNTVAEFEVQLEELLNEVRMLTMSGRKNDAVELLQANYEAVKEQMESGAVGIEQAAVLDIVALGYLTVGDLKFVASVLDILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISAYKRAIDIMEKKFGEDSSFLITPILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVLPLISLGNLMLKEGKGKDAETCFARIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDSNDMALDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLNNERLKGKEHPSSVKHLVNLAASYSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALEVLRIRENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILRIQEKEFGEDGKEVIDTLKKIVFCMDKLGMKDEKFLLQKRLSMLRMKFKNQMRY* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15983620 15992688 - Chy9G171590.1 Chy09g01443 234340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01443 672 Coils Coil 202 222 - -
Chy09g01443 672 Gene3D Tetratricopeptide repeat domain 295 464 IPR011990 GO:0005515
Chy09g01443 672 Gene3D Tetratricopeptide repeat domain 465 669 IPR011990 GO:0005515
Chy09g01443 672 ProSiteProfiles TPR repeat profile. 294 327 IPR019734 GO:0005515
Chy09g01443 672 Coils Coil 307 327 - -
Chy09g01443 672 Pfam Tetratricopeptide repeat 551 586 - -
Chy09g01443 672 Pfam MalT-like TPR region 296 495 IPR041617 -
Chy09g01443 672 SMART tpr_5 506 539 IPR019734 GO:0005515
Chy09g01443 672 SMART tpr_5 336 369 IPR019734 GO:0005515
Chy09g01443 672 SMART tpr_5 548 581 IPR019734 GO:0005515
Chy09g01443 672 SMART tpr_5 294 327 IPR019734 GO:0005515
Chy09g01443 672 SMART tpr_5 420 453 IPR019734 GO:0005515
Chy09g01443 672 SMART tpr_5 378 411 IPR019734 GO:0005515
Chy09g01443 672 SUPERFAMILY TPR-like 296 535 IPR011990 GO:0005515
Chy09g01443 672 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 209 661 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01443 - - - csv:101203336 1033.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01014 Chy-Chr6:7757644 Chy09g01443 Chy-Chr9:15983620 2.75E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34