Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00009 ATGACGGAGGAAGATGCCAAAGAACAGCTTAAGGGTACAGAGCTTCAGGCAAAAAAAACCCAGGTTACTCAGTTGCCTTGTGATGGCGATGGCATTTGCATGCTTTGTAAGGCCAAGCCTTCGGACGTGGAGACGATCACTTGCAAAACTTGCGTCACCCCGTGGCATGTTAGTTGTCTCTCAAATCCCCCTGAAACCCTGGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACCCCTCCTGAAGATGTTCCCCTTCCTCCGCCAGGCAACTATTCATTCCACACTGCGCCTTCTAATGACCTTGTCACGTCGATTCGAGCCATTGAGGCCGATGTCTCTCTTACTGACCGTGAAAAGGCAAAGAAGCGCCAGGAACTTCTCAGTGGAAAGTTGCAGTCCGACAAGGACGACCATGATACCAACAAGGAAAAGATTAAAAAGGGCGATAATGTTTTTGATTTGATTGACGAGAGATTGAACTGTTCCTTCTGCATGCAGTTACCAGAAAGGCCTGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGGTTGGACAAGGGAAGAACACTTGTGCAAAGTGCCGCTCCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAACGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGCTTCTGGGGGATCTCAGAAGGTTTATCATTTTGTTCACAATCAAAATCGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTTCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGACAGGCTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCTGGTATAGCGGGACAATCAAGTATTGGTGCACAGTCGGTGGTTCTTTCTGGTGGCTACCAAGATGATGAAGATCATGGGGAGTGGTTTCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAATCTTTTGACCAGAAATTTGAAAAATCAAATAAAGCGCTACAAGTTAGTTGTGCGAAGGGTTATCCTGTTAGGGTTGTCAGGTCTCATAAAGAAAAGCGTTCCTCTTATGCTCCAGAGAAGGGATTGCGGTATGATGGAGTTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGATATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGGCAAGTGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAAGAAGGGCCATCATGGGACTTTGATGTGAAAGACAGTCGATGGAAGTGGGCTAAAGATCCACCAACGAGCAAGAAACCAGTTGAAGGTCAAGATTCTACTGGGAAGAGAACAAGGATAAAAATTAGGCAATCACATAATATGAGTGTTCGAGAAAAGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAGCTTGCCAATTACTACGCCTTGTGCTCATAACTTTTGCAAGTCATGCTTGGAAGGAGCTTTTGTGGGAAAGACATTCTTGAGAGACAGAAAAACTGGTGGACGGGCTCTTAGATCTCAAAAGAATGTCTTGACTTGTCCTTGTTGCCCCACAGACATATCTGATTTTCTACAGAATCTTCAG 1806 45.13 MTEEDAKEQLKGTELQAKKTQVTQLPCDGDGICMLCKAKPSDVETITCKTCVTPWHVSCLSNPPETLASTLQWDCPDCSTPPEDVPLPPPGNYSFHTAPSNDLVTSIRAIEADVSLTDREKAKKRQELLSGKLQSDKDDHDTNKEKIKKGDNVFDLIDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWVGQGKNTCAKCRSVIPSKMASQPRINSTLVTAIRMAKLSKSFASGGSQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPSENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSSIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCAKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWASDEHGDRPRPLPAISELKKATDITERKEGPSWDFDVKDSRWKWAKDPPTSKKPVEGQDSTGKRTRIKIRQSHNMSVREKLLKEFSCLICREVMSLPITTPCAHNFCKSCLEGAFVGKTFLRDRKTGGRALRSQKNVLTCPCCPTDISDFLQNLQ 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 219737 229332 - Chy10G172030.1 Chy10g00009 234384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00009 602 SUPERFAMILY RING/U-box 155 224 - -
Chy10g00009 602 SMART PHD_3 32 79 IPR001965 -
Chy10g00009 602 Pfam SAD/SRA domain 294 442 IPR003105 -
Chy10g00009 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Chy10g00009 602 Pfam Zinc finger, C3HC4 type (RING finger) 163 201 IPR018957 GO:0046872
Chy10g00009 602 ProSiteProfiles Zinc finger PHD-type profile. 30 81 IPR019787 -
Chy10g00009 602 Pfam RING-type zinc-finger 534 588 IPR027370 -
Chy10g00009 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 230 IPR013083 -
Chy10g00009 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 602 IPR013083 -
Chy10g00009 602 SMART ring_2 163 201 IPR001841 -
Chy10g00009 602 SMART ring_2 534 590 IPR001841 -
Chy10g00009 602 SUPERFAMILY RING/U-box 527 595 - -
Chy10g00009 602 ProSiteProfiles Zinc finger RING-type profile. 534 590 IPR001841 -
Chy10g00009 602 ProSiteProfiles YDG domain profile. 291 439 IPR003105 -
Chy10g00009 602 ProSitePatterns Zinc finger PHD-type signature. 33 78 IPR019786 -
Chy10g00009 602 SMART G9a_1 286 443 IPR003105 -
Chy10g00009 602 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 21 602 - -
Chy10g00009 602 ProSitePatterns Zinc finger RING-type signature. 549 558 IPR017907 -
Chy10g00009 602 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 21 602 IPR045134 -
Chy10g00009 602 MobiDBLite consensus disorder prediction 492 511 - -
Chy10g00009 602 SUPERFAMILY PUA domain-like 265 460 IPR015947 -
Chy10g00009 602 SUPERFAMILY FYVE/PHD zinc finger 25 86 IPR011011 -
Chy10g00009 602 Gene3D - 262 458 IPR036987 -
Chy10g00009 602 ProSiteProfiles Zinc finger RING-type profile. 163 202 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01503 Chy-Chr6:16441505 Chy10g00009 Chy-Chr10:219737 4.28E-06 dispersed
Chy08g00351 Chy-Chr8:8308833 Chy10g00009 Chy-Chr10:219737 0 dispersed
Chy10g00009 Chy-Chr10:219737 Chy06g02091 Chy-Chr6:25093620 6.14E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00009 K10638 - csv:101219001 1243.41