Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00017 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGTCAGATGAGAGATCCAGATGCAGAAGTGATAGCGTTAAGTCCAAAGACATTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTACATAGAAGAGGACATAATTTACCATGGAAATTAAAGCAGAAAAGCACAAAAGAACCAAAAAGAAAAGTGTATTTATGCCCAGAACCAACATGCGTTCACCATGACCCGTCAAGAGCACTTGGGGATTTAACAGGTATCAAAAAACACTATTCACGAAAGCACGGAGAAAAGAAGTGGAAGTGCGATAAATGCTCTAAACGCTACGCCGTTCAATCCGACTGGAAAGCTCATTCCAAAACCTGTGGCACTAGAGAATATCGTTGCGATTGTGGCACTCTCTTCTCCAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACACCCTCCAAATTTAGGGACAGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAACTCTCTTCTCAAGACCATTCCAACATCACCCAATCACCCCACGACGTCCTTCGTCTTGGCGGTGGTCGAACCGGACAGTTCACTCATCTCCTCCCCCCTTCTATTGGCTCTTCCTTCCGACCCCCACCACAACAAGCAATGCCGTCATCGAATGCAGCATTCTTCGGCCTATCGGACCAAACTAACCAAAATAGCTTCCATGAAGATCATCATCAAAGCCAATCCCAGCAAGGGTTATTTGGAAACAAGCCTTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAATAACAACAACAATTCTGCTTCAAATCTCTTCAATTTGAGCTTCATTTCAAATCCCACTGCTGCAGTCCCCTCGCTCTACAGCAACACCGTCCCGGGAGGATGTAGTAGCGGTACTAGCGGAGGAGGAGCAATTCCGCATATGTCCGCAACAGCACTGCTCCAAAAAGCAGCACAATTAGGCTCAACAACGTCAAGTAGCAATACTACAGCGACATTGCTACGCACATTTGGAAGCTCCTCGACCTCAAGCGGTAAGGCATCAGATAGAACGCTCTTCCCACCGAGTTATGGCGGAGTAGTATTCGGTGAAAATGAGAGTAATCTCCAAGACCTGATGAACTCATTTGCAAACGCGAGCTCAGGGAGTGGGATGTTCGGGTCGTTTGGGGTGGAAAGTTTAGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTATGGGAGGTGGGACAGATAGGTTAACAAGAGACTTCTTAGGGGTGGGACAAATCGTAAGAAGTATGAGCGGAGGTGGTGGCGGTGGCGGTTATTCACAGAGAGAACATAAACAAGGGGGGCAAGGGATAGTTATGGAGGGTAATGAGAGCAATACGGCGCCGTCAAGCAATGCATTTGGTG 1504 46.01 MAASSSSVPLFGVREEGQMRDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRAFCDALAQESARHPPNLGTAIGSHLYGGNSNVGLTLSQVPQLSSQDHSNITQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAFFGLSDQTNQNSFHEDHHQSQSQQGLFGNKPFHGLMQFPSDIQTHANNNNNSASNLFNLSFISNPTAAVPSLYSNTVPGGCSSGTSGGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSSGKASDRTLFPPSYGGVVFGENESNLQDLMNSFANASSGSGMFGSFGVESLEDPTKLQQNLSTVSMGGGTDRLTRDFLGVGQIVRSMSGGGGGGGYSQREHKQGGQGIVMEGNESNTAPSSNAFGX 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 579188 581730 - Chy10G172110.1 Chy10g00017 234392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00017 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 475 - -
Chy10g00017 502 MobiDBLite consensus disorder prediction 198 217 - -
Chy10g00017 502 MobiDBLite consensus disorder prediction 234 275 - -
Chy10g00017 502 Pfam Zinc-finger double-stranded RNA-binding 40 62 IPR022755 -
Chy10g00017 502 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 17 475 - -
Chy10g00017 502 MobiDBLite consensus disorder prediction 464 502 - -
Chy10g00017 502 SMART c2h2final6 40 62 IPR013087 -
Chy10g00017 502 SMART c2h2final6 116 136 IPR013087 -
Chy10g00017 502 SMART c2h2final6 81 111 IPR013087 -
Chy10g00017 502 SUPERFAMILY beta-beta-alpha zinc fingers 39 136 IPR036236 -
Chy10g00017 502 MobiDBLite consensus disorder prediction 224 297 - -
Chy10g00017 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 62 IPR013087 -
Chy10g00017 502 MobiDBLite consensus disorder prediction 485 502 - -
Chy10g00017 502 Gene3D Classic Zinc Finger 37 138 - -
Chy10g00017 502 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00017 Chy-Chr10:579188 Chy11g00664 Chy-Chr11:8175368 1.20E-95 dispersed
Chy10g00017 Chy-Chr10:579188 Chy04g02074 Chy-Chr4:26207043 1.16E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18539 PF12171 zf-C2H2_jaz 3.00E-05 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00017 K25870 - csv:101219959 787.719