Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00019 ATGGCAGAGGAGTGCACTGAGAGTTCTGTTGCTACCTCTAATTCAACTCCATCAAACTGGTGGGATATTAATCATAATCATAATCACCATCACCATCACCATCCTTCACTTTCCTATAATTCTCATTGGCTTCTCCAAAACCCTAATTCCAATTCCTCTTGTGAAGAGGATGTTTCCATCTCTACTTCTTCTTTTACCAACGCTTCTAATCACCTTCTTCCTCACCATCCTTCTGATAATAACCACCTTTGGACTCAAGTTTTGCTGAACATAGGAAATGATGTAGAATTAGAAAGCAACGAAGAAGACATAGAAGGGAATTTCCTAGAGACAATATCATCAAGATCAAGCATGTCCACCACCGGAATCTTCGAGTCCACCGCATGTAGCGATTACCTTAAAAAAATGGACACATCAAACAACAATAACAACAATTGGGACGACACTTTCCAAACCTTCAACACCAACAACAATAACAATAACAGACTTCTTACGTCCCACACTCACATGCTCCAAAACGAAAGGTTCTTGAAGCTTTCTAATCTCGTAAACAGGTGGTCCATTGCCCTCCCGAGCCCAGACCCACACCTACGACAGTTGATGGATGACCAACACGACCATCTTCGAGCCAGCACTATGCCAACTCATGAAATACTCGAGCCAGATGGGACCGTGTCTCACCAAGGGCTCGACCCATGTGACTCGAGCTTCCTTCGGAGGTCCCTTCAAAATCAAAATTATGGTGATTATATTTCTTTTAATGGACGACTAGCTAAACCGGTGGTCGGTATCAATGGTTCGAGTAATAATCCTTGTTTTAAGTCGTCACTGAATTTGTCTGCTGATAGTAAGAAACAGATTCACCAAATTTGTTCGCCGACAAGAATTAGTGGAAGAGGAAGTGGAGGAGTTTCGAACGAAGGAAAGAAAAAAAGATCCGAAGAATCTTCGTCTGAAACATCAACCAAAAAGGCTAAGCAAGATAACTCAACACCTTCTTCCAATAAGATTCAACAACCAAAGGTCAAAATTGGAGACAGGATAACGGCCCTTCAGCAAATTGTGTCGCCATTTGGAAAGACTGATACGGCGTCAGTTCTAACCGAAACCATTGGATACATAAAGTTCCTACAAGAGCAAGTCCAGCTACTGAGCAATCCTTACATGAAGACCAATTCCTATAAGGATCCATGGCAAAGTTTGGAGAGAAAAGAAGGGAAAGGAGATGGGAAAATGGACCTAAGGAGCAGAGGTCTTTGTTTAGTTCCAATTTCATGTACTCCTCAAGTCTATAGAGAGAACACAGGATCTGACTATTGGACACCTTACAGAGGTTGTTTCTATAGATAG 1350 41.93 MAEECTESSVATSNSTPSNWWDINHNHNHHHHHHPSLSYNSHWLLQNPNSNSSCEEDVSISTSSFTNASNHLLPHHPSDNNHLWTQVLLNIGNDVELESNEEDIEGNFLETISSRSSMSTTGIFESTACSDYLKKMDTSNNNNNNWDDTFQTFNTNNNNNNRLLTSHTHMLQNERFLKLSNLVNRWSIALPSPDPHLRQLMDDQHDHLRASTMPTHEILEPDGTVSHQGLDPCDSSFLRRSLQNQNYGDYISFNGRLAKPVVGINGSSNNPCFKSSLNLSADSKKQIHQICSPTRISGRGSGGVSNEGKKKRSEESSSETSTKKAKQDNSTPSSNKIQQPKVKIGDRITALQQIVSPFGKTDTASVLTETIGYIKFLQEQVQLLSNPYMKTNSYKDPWQSLERKEGKGDGKMDLRSRGLCLVPISCTPQVYRENTGSDYWTPYRGCFYR* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 731682 736567 - Chy10G172130.1 Chy10g00019 234394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00019 449 MobiDBLite consensus disorder prediction 323 340 - -
Chy10g00019 449 MobiDBLite consensus disorder prediction 305 322 - -
Chy10g00019 449 PANTHER TRANSCRIPTION FACTOR BHLH111 42 436 - -
Chy10g00019 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 394 IPR036638 GO:0046983
Chy10g00019 449 MobiDBLite consensus disorder prediction 291 342 - -
Chy10g00019 449 Gene3D - 338 399 IPR036638 GO:0046983
Chy10g00019 449 CDD bHLH_AtbHLH_like 338 385 IPR045239 -
Chy10g00019 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Chy10g00019 449 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00019 - - - csv:116403687 815.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01499 Chy-Chr7:19264481 Chy10g00019 Chy-Chr10:731682 1.98E-28 dispersed
Chy10g00019 Chy-Chr10:731682 Chy02g00358 Chy-Chr2:2306620 3.65E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1105 . . . . . . . . Cmo04g01049 . Cma04g00972 . Car04g00914 . . . . . . . . . . . . . . . . . . . . . . . . Chy10g00019 Cme10g01341 . . . . Bpe11g01724 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00946 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012297 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00019 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0