Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00052 ATGGCAGCTACGGTGACCACAAAACGAGTAATTCTTATAATTGCAATGGCGTTATTACTTTTGAGCACAACTGAAGCCCAACTTTCGTCTACATTCTACGATCAAACTTGTCCCACTGCACTCCCTACTATTAGAACTGTTATTAGGCAAGCAGTTTCTCAAGAACGTCGAATGGCTGCATCTCTCATTCGGCTTCATTTCCATGATTGTTTTGTTCAAGGTTGTGATGCATCAATTTTACTCGATGATACTCCATCGATGATTGGTGAACAAAATGCAGCACCAAACATAAAGTCTGCAAGAGGTTATGGAGTGATTCATAAGGCTAAAACTGAAGTTGAGAAGGCATGTCCAGGCATAGTATCTTGTGCAGACATCCTTGCTGTGGCTGCAAGAGATGCATCTTTTTCTGTTGGTGGTCCATCTTGGACAGTAAAGCTTGGAAGAAGAGATTCTACCTCTGCAAGTAAAACTTTAGCAGAGAGTGAGCTTCCACATTTCCAAGAAAGCCTTGACAGACTTATATCCATTTTTGCAAATAAAGGTCTTAACACCAGAGATATGGTTGCACTCTCAGGTTCTCATACTATAGGACAATCTCAATGCTTTCTTTTTCGCAATAGGATATACAACCAAAGCAATATTGATGCAGGATTTGCTAGCACTCGACAAAGAAATTGTCCAACATCGGGTGGGAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCTTTTGACAATAATTATTTCAAAAATCTTATTCAGATGAAGGGTTTGCTTGAAACAGATCAAGTTCTTTTTAGTGGAGGATCAACAAATAATATTGTTACTGAATATAGTAGAAACCCAACTACATTCAAATCGGATTTTGCGGCTGCCATGATTAAAATGGGAGACATCCAACCTCTTACTGGTTTAGAAGGAGAAATAAGAAATATATGTGGTGCGGTCAATTAA 963 39.04 MAATVTTKRVILIIAMALLLLSTTEAQLSSTFYDQTCPTALPTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNIKSARGYGVIHKAKTEVEKACPGIVSCADILAVAARDASFSVGGPSWTVKLGRRDSTSASKTLAESELPHFQESLDRLISIFANKGLNTRDMVALSGSHTIGQSQCFLFRNRIYNQSNIDAGFASTRQRNCPTSGGNGNLAPLDLVTPNSFDNNYFKNLIQMKGLLETDQVLFSGGSTNNIVTEYSRNPTTFKSDFAAAMIKMGDIQPLTGLEGEIRNICGAVN* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1295853 1297025 + Chy10G172460.1 Chy10g00052 234427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00052 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 SUPERFAMILY Heme-dependent peroxidases 27 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 Gene3D Peroxidase, domain 2 165 299 - -
Chy10g00052 320 Gene3D - 31 316 - -
Chy10g00052 320 PANTHER PEROXIDASE 72-RELATED 9 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 PANTHER PEROXIDASE 9 319 - -
Chy10g00052 320 Pfam Peroxidase 45 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00052 320 CDD secretory_peroxidase 27 319 IPR033905 GO:0004601|GO:0042744
Chy10g00052 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Chy10g00052 320 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Chy10g00052 320 ProSiteProfiles Plant heme peroxidase family profile. 27 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00052 Chy-Chr10:1295853 Chy11g01393 Chy-Chr11:20352159 3.34E-132 dispersed
Chy10g00052 Chy-Chr10:1295853 Chy10g00053 Chy-Chr10:1309998 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00052 K00430 - csv:116403796 600.897