Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00053 ATGTCAATGCCTCGACTAGTTGTTGTTGCATTCACCTTGTTGCTTTTCGGTTTAGCATGCGATGCTCAACTTTCCTCTTCCTTTTACGATCAAACTTGTCCTACTGCACTCATAACTATTAGAACTGTCATTAGACAAGCCATCTCCCAAGAACGTCGTATGGCTGCATCTCTCATTCGCCTCCATTTCCACGATTGTTTTGTTCAGGGTTGCGATGCATCGATATTGCTTGATGATACTCCCTCTATGATTGGTGAACAAAATGCAGCACCCAATAGAAACTCTGCTAGAGGTTATGGGGTGATACACAAGGCCAAGACGGAAGTTGAGAAGATTTGTCCTGGCGTTGTATCTTGTGCTGATATTCTTGCAGTTGCTGCAAGAGATGCTTCTTTTGCTGTCGGTGGTCCATCATGGACAGTAAGGCTTGGAAGAAGAGATTCGACCACTGCAAGCAAAACTTTAGCAGAGAATGAGCTTCCACATTTTCAAGCAGGTCTTGATAGGCTTATTTCTATCTTTTCAAATAAAGGACTTAGTACAAGAGATATGGTTGCACTCTCCGGTTCTCATACTATAGGGCAAGCCCAATGTTTTCTCTTCCGCAATAGAATATACAATCAAACTAATATCGATTCAGGATTTGCTAGCACACGTCGAAGAAATTGTCCAACATCGAGTGGGAATGGAAATTTGGCACCACTAGATTTGGTCACACCCAATTCCTTTGACAACAATTACTTCAAAAATCTTGTTCAAAGAAAAGGTTTGCTAGAAACAGATCAAGTTCTCTTTAATGGAGGATCAACAGATAGCATTGTTACAGAGTATAGTAAAGATCCAACTATGTTCAAATCTGACTTTGCAGCAGCAATGATCAAAATGGGAAATATTCAACCTCTCACTGGTTTAGAAGGAGAAATAAGAAATATTTGTGGTATCGTTAACTAA 951 40.27 MSMPRLVVVAFTLLLFGLACDAQLSSSFYDQTCPTALITIRTVIRQAISQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKTEVEKICPGVVSCADILAVAARDASFAVGGPSWTVRLGRRDSTTASKTLAENELPHFQAGLDRLISIFSNKGLSTRDMVALSGSHTIGQAQCFLFRNRIYNQTNIDSGFASTRRRNCPTSSGNGNLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDSIVTEYSKDPTMFKSDFAAAMIKMGNIQPLTGLEGEIRNICGIVN* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1309998 1311137 - Chy10G172470.1 Chy10g00053 234428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00053 316 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Plant peroxidase signature 290 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 Gene3D Peroxidase, domain 2 161 295 - -
Chy10g00053 316 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Chy10g00053 316 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Chy10g00053 316 CDD secretory_peroxidase 23 315 IPR033905 GO:0004601|GO:0042744
Chy10g00053 316 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PANTHER PEROXIDASE 72-RELATED 5 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Chy10g00053 316 ProSiteProfiles Plant heme peroxidase family profile. 23 316 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy10g00053 316 PANTHER PEROXIDASE 5 313 - -
Chy10g00053 316 Gene3D - 28 312 - -
Chy10g00053 316 Pfam Peroxidase 41 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00215 Chy-Chr3:2013946 Chy10g00053 Chy-Chr10:1309998 1.47E-137 dispersed
Chy10g00053 Chy-Chr10:1309998 Chy11g01393 Chy-Chr11:20352159 2.37E-133 dispersed
Chy12g00341 Chy-Chr12:3595527 Chy10g00053 Chy-Chr10:1309998 1.27E-87 dispersed
Chy10g00052 Chy-Chr10:1295853 Chy10g00053 Chy-Chr10:1309998 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00053 K00430 - csv:116403994 612.068