Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00056 ATGGGTCTCTACTTCTTCCTCTCTACAATGCCCATTTCAAGCCTTTTTCTCCTCTTCGCTTTTCTTTCTCTGTTTCTCTCAACCCTTTCCACCGCCGCTGACCGGAACTTCCTCCTCCTCCACCACCACCGTCATCACCGCCACCTTCTCCACCAACCCTTTTTCCCATGGACTTCTTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGTCTCAACCACAGCACCTACAGCCTAAACTCCCCTTTTCTTCTAACTCATTTTCCTCACCCCCTAAACCCTTTTTTCCATCCTACCCTTCCTCGCCACCGCCGCCTCCCTCGCCTCCTTCGACGGCGCTTCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTCCCGCAGCCTACTTCTTCTTCCCAGCACCTCCACCGCCATGTCTTTGCCATTGTCATCTCTGTTTCTCTTGTCTTTTCTGTTCTTGTTTTTTTCGTTGCTCTGTTTTTCTACTATCGAAACCGGAACCGACAAGTCTCTGCTACTGACAAGGCCTCTAGAACTGATAATCTTCGGCTCTACCCTCCGAATATTGACACTTCTGATGGAGTTCATAAGAACAGAGCCTCTTCCACTACCACCTCCAAGTTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAAGAGGCTGCTGGAACCGTGGAGGAGGGTGGTGGCGGAATCGTCGAGTCTGTTTCTCCAGTGAAAATGGGGTCGCCGGAGCTGAATCCCCTTCCACCGCTTCCTCGCCGGAATTTCGCAGACGATTATCGGAGGAATGCTGATGGTAATGATGATGATGATGATGATGATGACTACGATCGCGACGACGAAGAGTTTTTTTCACCAAGAGGGTCTTCCGTCGGCGGTAAGGAGAATGTGGGGAGTAATAGAAGATTGAGCCCCGTGAAGTTGTTTCATAATGTGGAAACTGAAAATTTTTTGAGGAAAAGCTATAATTCCAGTTTGAATTCTGGTTCTCCCTCTGTTTCTCTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACTAGCTTGAGATCAAAGTCTCCGGACTCCATTATCAGATTCCCTGTTCCTTTACGGCCATTGTCAACGCTTCCAGTACCACCATCACCGTCGTTCTCCTCTGCTTCTTCGCCACTGGGAGGTTCTGGGAACACCAAGAACTCGCCATCGAGGGATTTTGATTTGCCGGAGCTGCCTCGGCAGTTTTCAGATGGATCTAGGATGGATTACCAGCAACCATTGCCAGTGAAACTACCAACAGCCCCTCCTCTGCGTCCGCCACCGCCACCTCCTCCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCCTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCAGTACTCACCGTGCCAACAAGACCGATACTCTCACAGAACATAGCTCATATGTCAGCAGGGGAGCAATCAAACACCATTGTAGATGCAGAGAGAACGGAAGAAACTTTGAAGCCGAAACTGAAGGCATTGCATTGGGACAAAGTTCGGATGAGCTCTGATCGAGCAATGGTGTGGGATCAGATCAAATCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAATAATAATTCCAATATTATGAGCAAAGAAAATGGTAGTGTTCATCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATAGAAGAAGTCTTGGAAGCCCTTTTGGAAGGAAACTCAGATGCTTTGTGTACTGAACTGCTCGAAAGTTTACTGAAAATGGCGCCAACTGAAGAAGAAGAGCGTAGTTTGAAAGAATACAAAGACGATTCACCTTTTAAACTTGGACCAGCTGAGAAATTTCTCAAGGTAGTTCTTGATATACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATGGCCAATTTCGATTCTGAGGTTGAGTACCTCATTCGGTCCTTTACAACTCTTGAGGCTGCTTGTACAGAATTGAAGAACAGCAGAATGTTTCTCAAGCTTCTTGAAGCAGTGCTCAAAACTGGGAACCGGATGAATGTAGGCACGGATAGAGGCGACGCACATGCTTTTAAACTTGACACTCTTCTCAAGCTTGTTGATATCAAGGGCACTGATGGAAAAACTACTCTCTTGCATTTTGTAGTACAGGAGATTATTAGAGCTGAAGGTTATCGACACTCCACCTCCGACAACAACCTGACAGCTGATAATACTCAGCAATCTTCCTTGACAAATGATGTCGAGTTTCGAAAGCTTGGTCTTCAAGTCGTTTCGGGTCTTAGTAGGGAGCTATCCAATGTGAAAAAAGCTGCATTAATGGATGCAGATGTACTTATCCACGATGTAGGGAAACTTGCTGGAGGGATCACAAAAATCACAGAGGTCATTAGATTGAATGAAGACATGCTGAAAGGAGGAAGTCAGTCGAATTTCTCTGACGCCATGAACAAGTTCTTGGGGAAGGCAGCAGAAGAAGTATCAAGGATACAAGTTCAAGAAGGCATTGTCCTCACCATGGTAAAGGAAATAACCGAATACTTCCATGGAAACCTAGCAAAAGAAGAAGCTCGGCCGCTGCGCATTTTTATGGTGGTAAAGGATTTTCTTGCCATCTTAGATCAGGTATGCAAAGAAGTCGGAAGAATCAATGAAAGAACAATAGTTGGTTCGGCTCGTCAATTTACGGGCCCTATGAATCCATGTCTTCCATCGGTTTTCCCTGGATTATGCGAAAGCCAGCGCTATGGTTCGTCTGATGACGATAGTTCATCTTCCTCATCATAG 2886 45.67 MGLYFFLSTMPISSLFLLFAFLSLFLSTLSTAADRNFLLLHHHRHHRHLLHQPFFPWTSLPPSQAPSSLSPLSQPQHLQPKLPFSSNSFSSPPKPFFPSYPSSPPPPPSPPSTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVFFVALFFYYRNRNRQVSATDKASRTDNLRLYPPNIDTSDGVHKNRASSTTTSKFLYLGTLATSREIDEEAAGTVEEGGGGIVESVSPVKMGSPELNPLPPLPRRNFADDYRRNADGNDDDDDDDDYDRDDEEFFSPRGSSVGGKENVGSNRRLSPVKLFHNVETENFLRKSYNSSLNSGSPSVSLPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLSTLPVPPSPSFSSASSPLGGSGNTKNSPSRDFDLPELPRQFSDGSRMDYQQPLPVKLPTAPPLRPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPTRPILSQNIAHMSAGEQSNTIVDAERTEETLKPKLKALHWDKVRMSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSNIMSKENGSVHQNMPLGSQENRVLDPKKSQNIAILLRALNVTIEEVLEALLEGNSDALCTELLESLLKMAPTEEEERSLKEYKDDSPFKLGPAEKFLKVVLDIPFAFKRVDAMLYMANFDSEVEYLIRSFTTLEAACTELKNSRMFLKLLEAVLKTGNRMNVGTDRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDNNLTADNTQQSSLTNDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLIHDVGKLAGGITKITEVIRLNEDMLKGGSQSNFSDAMNKFLGKAAEEVSRIQVQEGIVLTMVKEITEYFHGNLAKEEARPLRIFMVVKDFLAILDQVCKEVGRINERTIVGSARQFTGPMNPCLPSVFPGLCESQRYGSSDDDSSSSSS* 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1398601 1402076 - Chy10G172500.1 Chy10g00056 234431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00056 961 MobiDBLite consensus disorder prediction 381 404 - -
Chy10g00056 961 MobiDBLite consensus disorder prediction 271 286 - -
Chy10g00056 961 MobiDBLite consensus disorder prediction 378 453 - -
Chy10g00056 961 PANTHER FORMIN-RELATED 35 958 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy10g00056 961 MobiDBLite consensus disorder prediction 329 360 - -
Chy10g00056 961 PANTHER FORMIN-LIKE PROTEIN 2 35 958 - -
Chy10g00056 961 SMART it6_source 498 921 IPR015425 -
Chy10g00056 961 MobiDBLite consensus disorder prediction 226 308 - -
Chy10g00056 961 SUPERFAMILY Formin homology 2 domain (FH2 domain) 439 919 - -
Chy10g00056 961 Gene3D Formin, FH2 domain 496 916 IPR042201 -
Chy10g00056 961 ProSiteProfiles Formin homology-2 (FH2) domain profile. 498 932 IPR015425 -
Chy10g00056 961 Pfam Formin Homology 2 Domain 500 906 IPR015425 -
Chy10g00056 961 MobiDBLite consensus disorder prediction 429 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00056 - - - csv:101213912 1466.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00807 Chy-Chr4:10513486 Chy10g00056 Chy-Chr10:1398601 3.58E-18 dispersed
Chy10g00056 Chy-Chr10:1398601 Chy11g00235 Chy-Chr11:2211403 4.96E-173 dispersed
Chy10g00056 Chy-Chr10:1398601 Chy12g01523 Chy-Chr12:18995713 8.42E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00807 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 50.7 2.7e-187 652.9
Chy10g00056 . 467 943 FH2 protein (formin) Gene Family AT3G25500 65.6 3.6e-163 572.8
Chy11g00235 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.5 1.0e-141 501.5
Chy08g01021 . 488 880 FH2 protein (formin) Gene Family AT3G25500 51.2 2.7e-102 370.5
Chy04g00807 . 623 1072 FH2 protein (formin) Gene Family AT2G43800 58.7 6.4e-137 485.3
Chy11g00235 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.0 1.5e-125 447.6
Chy11g00585 . 322 622 FH2 protein (formin) Gene Family AT4G15200 52.2 5.1e-53 205.7
Chy04g01020 . 440 586 FH2 protein (formin) Gene Family AT4G15200 65.5 1.1e-47 188.0
Chy04g01020 . 4 949 FH2 protein (formin) Gene Family AT5G54650 50.7 2.2e-177 619.8
Chy11g00585 . 476 939 FH2 protein (formin) Gene Family AT5G54650 63.3 2.9e-161 566.2
Chy04g00807 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.4 2.3e-102 370.5
Chy11g00235 . 36 913 FH2 protein (formin) Gene Family AT5G67470 57.3 3.7e-233 805.1
Chy04g00807 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.7 7.9e-135 478.4
Chy10g00056 . 505 925 FH2 protein (formin) Gene Family AT5G67470 63.0 1.9e-128 457.2
Chy08g01021 . 488 882 FH2 protein (formin) Gene Family AT5G67470 51.9 2.9e-105 380.2
Chy10g00942 . 328 815 FH2 protein (formin) Gene Family AT1G59910 52.5 3.3e-128 456.4
Chy04g00807 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.1 4.2e-100 362.8
Chy11g00235 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 3.9e-90 329.7
Chy11g00235 . 472 870 FH2 protein (formin) Gene Family AT3G05470 52.2 2.6e-106 383.6
Chy04g01020 . 446 860 FH2 protein (formin) Gene Family AT3G05470 50.7 5.8e-106 382.5
Chy04g00803 . 932 1243 FH2 protein (formin) Gene Family AT1G42980 50.2 6.1e-68 254.6
Chy04g00803 . 1 1250 FH2 protein (formin) Gene Family AT1G31810 69.2 0.0e+00 1230.7
Chy02g02475 CCT 1 376 FH2 protein (formin) Gene Family AT1G31810 54.5 1.7e-127 454.5
Chy07g00331 . 1075 1397 FH2 protein (formin) Gene Family AT5G07650 63.8 7.7e-110 395.2
Chy12g01523 CCT 1678 1959 FH2 protein (formin) Gene Family AT5G07650 70.9 1.7e-109 394.0
Chy02g02115 . 986 1305 FH2 protein (formin) Gene Family AT5G07650 62.0 1.5e-108 391.0
Chy04g00803 . 916 1247 FH2 protein (formin) Gene Family AT5G07650 59.0 1.8e-106 384.0
Chy12g01523 CCT 1601 1959 FH2 protein (formin) Gene Family AT5G07770 63.9 6.7e-119 424.9
Chy07g00331 . 1000 1389 FH2 protein (formin) Gene Family AT5G07770 58.6 1.5e-118 423.7
Chy02g02115 . 909 1297 FH2 protein (formin) Gene Family AT5G07770 56.7 2.0e-115 413.3
Chy04g00803 . 852 1241 FH2 protein (formin) Gene Family AT5G07770 55.2 2.2e-114 409.8
Chy07g00331 . 992 1400 FH2 protein (formin) Gene Family AT3G32400 74.8 3.0e-168 588.6
Chy02g02115 . 893 1306 FH2 protein (formin) Gene Family AT3G32400 66.1 7.6e-148 520.8
Chy04g00803 . 852 1246 FH2 protein (formin) Gene Family AT3G32400 66.2 2.4e-141 499.2
Chy12g01523 CCT 1571 1962 FH2 protein (formin) Gene Family AT3G32400 57.8 6.1e-121 431.4
Chy07g00331 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 52.9 0.0e+00 1152.9
Chy02g02115 . 47 1306 FH2 protein (formin) Gene Family AT2G25050 50.7 4.5e-284 974.5
Chy02g02475 CCT 1 374 FH2 protein (formin) Gene Family AT2G25050 63.6 9.5e-141 498.4
Chy07g00331 . 1001 1390 FH2 protein (formin) Gene Family AT5G07780 54.4 3.3e-105 379.0
Chy12g01523 CCT 1602 1959 FH2 protein (formin) Gene Family AT5G07780 56.7 2.7e-102 369.4
Chy04g00803 . 853 1242 FH2 protein (formin) Gene Family AT5G07780 52.5 1.3e-101 367.1
Chy02g02115 . 916 1297 FH2 protein (formin) Gene Family AT5G07780 53.3 4.2e-100 362.1
Chy02g02475 CCT 1 662 FH2 protein (formin) Gene Family AT5G07740 59.3 7.6e-197 685.3
Chy07g00331 . 1074 1397 FH2 protein (formin) Gene Family AT5G07760 65.5 4.9e-110 396.0
Chy02g02115 . 985 1305 FH2 protein (formin) Gene Family AT5G07760 64.4 8.4e-110 395.2
Chy12g01523 CCT 1677 1959 FH2 protein (formin) Gene Family AT5G07760 71.4 7.1e-109 392.1
Chy04g00803 . 926 1247 FH2 protein (formin) Gene Family AT5G07760 60.4 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012766 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00056 Chy_Chr10 FPKM 6.621822 6.179657 6.367634 8.541986 13.818107 13.484536 12.274391 6.915297 6.514257 6.158036