Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00085 ATGAGTATGAAGATGCAGCAGAGCCACCACTCAGTGGCTGTAAGATTTAATGAGCAAATTGGAAGTAAAAAAGGGTCCACATTTATTCAAGCCAAGAGGGATTGGCTTCCTAAGTTTCTATTGCTCTGGGTTCTGTTGGTGGCATTCATAAGTATGTTAATCTACAAGGGAATGGATGCTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGAAGTATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTTAGTGTCAGTGTCAACCATGTCCATGCTTTGGCTATTCTCATTTCCACTTTCCACTACTCCAAAAATGTATCAGCAATTGATCAGGAAACTTTTGCTGAGTACACGGCCCGAACAGCTTTCGAGCGGCCTTTGCTTAGTGGCGTGGCATTTGCGCAAAGAGTGGTGCACTTTGAGCGAGAAAAATTTGAGAAGCAGCATGGGTGGACTATAAAAACAATGGAAAGGGAACCATCACCTATAAAGGATGAGTATGCGCCAGTCATATTTTCCCAGGAGACAGTTTCCTATATCGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGTGAGAACATTTTGAGGTCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTGCTGACAATACCTGTTTATAAAACTAAGCTGCCTCAAAACCCAACAATGGATGAACGAACACGAGCAACGGCAGGCTACCTTGGTGGAGCATTTGATGTGGAATCGCTTGTGGAAAATTTACTTGGACAACTTGCTGGAAATCAGGCTATTTTGGTGAATGTATACGATGTCACGAACTACTCTGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGTGACATGTCTCTTTTACATGAGAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCATCAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACGGCACTTACTACTGCATTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATCTTATACGGTGCAGCAACTCATATTGTTAAAGTGGAGGATGATTTTCATGAAATGCAAGAACTGAAAGTTCGAGCCGAAGCTGCTGATATTGCAAAATCTCAGTTTCTCGCCACAGTCTCTCATGAAATAAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTTTACTTCTTGATACTGAGCTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCTCAGGCCTGTGGAAAAGCACTGATAGCGTTAATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGGAAGTTGGAGCTTGAAGCGGTTCCTTTCGACCTTAGATTGATACTAGATGATGTTTTGTCTTTGTTTTCTGAAAAGTCAAGACACAAGGGAGTTGAGTTGGCAGTATTCGTTTCTGACAAAGTTCCTGAAATCGTTATGGGAGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTCGTGGGTAACTCTGTGAAATTCACAGAACAAGGACATATATTTGTCAAAGTTCAATTAGCTGAACAATCAATGGTCTCTACAAATATCAAATCTGAAACTCACGTGAATGGAAACTTAGAAGATGGTGTATCGCACAATAAACATCAGTTTGAAACCTTAAGTGGATTTGAGGCAGCTGATAACCAAAACAGTTGGGACACTTTTAAGCACCTAGCAAATGAGGAATTTCAACCAAACGGTTCAAGCAATCTCATGGCTACAAATGAAATTTCTGATATTGTTACTGTCATGATATCTGTGGAAGATACAGGAATTGGGATTCCATTAAGTGCACAAGGTCGGGTTTTTATGCGGTTCATGCAAGCAGATAGCTCAACATCCAGAAACTATGGTGGAACTGGTATTGGCTTAGACATCAGTAAGTGTTTGGTTGAATTAATGGGCGGCCAGATAAACTTTGTAAGCAGGCCTCAGGTTGGAAGCACATTCTCATTCACTGCTGTTTTTGGGAGATGTGAGAAGAAAGCAACAGTTAACATCAAAAAGTCGAATTTGGAGGAACTTCCTTCTGCATTTAGAGGATTGAAAGCAGTTGTAGTTGATGGGAAACCAGTTAGAGCTGCTGTTACCAAATATCATTTGAAAAGGCTTGGCATCCTGGTTGAAGTTGCCAGTAGTGTCAAGATGGCTTCAGCTTTATGGGGGAAAAATGGATCAGTTAGATCAAGCAATATACTTCAGCCTGACGTAATCCTTCTCGAGAAAGATATCTTTATTTCAAATGAGGAATGTGGTTCTTCTAATCTGCTTCATCAACTAGACTGGAAGCAGAATGGTCATACCATAAAACTGCCAAAATTGATTCTTCTTGCAACCAGCATGAGCACGGTGGAATTTGATAAAGCAAAGGAAATGGGTTTCTCTGACACCTTGATCATGAAACCATTGAGAGCAAGCATGATCGGTGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGACAGCTTGGGAAGGACATGGCCAATGGCTCTAACTTTCTTAAAGGGCTGCTCTGTGGTAAGAAAATATTGGTCGTTGATGACAATAAGGTAAACCGAAGAGTTGCTGCAGGTGCTTTAAAGAAATTTGGTGCCGATGTAGAGTGTGTCGAGAGCGGGAAAGCTGCATTGGCATTGCTTCAACTGCCACACAGTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTTGAAGCAACCCGAAGAATCAGGATGATGGAGACCAAGGAAAATGAGGTACTGATTAGGGAATCAAATGGCAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCCATGACCGCAGATGTAATTCACGCAACATACGACGAGTGTCTGAAATGTGGGATGGATGGATATGTATCGAAGCCATTTGAGGAAGAGAATCTTTACCAGGCAGTTGCCAAGTTTTTCAATACAAAGCCAATCACTGATTCATGA 3015 41.56 MSMKMQQSHHSVAVRFNEQIGSKKGSTFIQAKRDWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYSKNVSAIDQETFAEYTARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIKDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPQNPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLLHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMVSTNIKSETHVNGNLEDGVSHNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVEDTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSRPQVGSTFSFTAVFGRCEKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMASALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHTIKLPKLILLATSMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFDACFMDIQMPEMDGFEATRRIRMMETKENEVLIRESNGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFNTKPITDS* 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2159657 2166780 - Chy10G172790.1 Chy10g00085 234460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00085 1004 CDD HisKA 380 441 IPR003661 GO:0000155|GO:0007165
Chy10g00085 1004 CDD REC_hyHK_CKI1_RcsC-like 861 992 - -
Chy10g00085 1004 PANTHER HISTIDINE KINASE 4 21 999 - -
Chy10g00085 1004 SUPERFAMILY CheY-like 696 834 IPR011006 -
Chy10g00085 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 492 672 IPR003594 -
Chy10g00085 1004 CDD HATPase_EvgS-ArcB-TorS-like 497 673 - -
Chy10g00085 1004 ProSiteProfiles Response regulatory domain profile. 700 833 IPR001789 GO:0000160
Chy10g00085 1004 Gene3D - 694 837 - -
Chy10g00085 1004 Gene3D - 855 1003 - -
Chy10g00085 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 999 - -
Chy10g00085 1004 SMART HKATPase_4 492 675 IPR003594 -
Chy10g00085 1004 Gene3D - 444 678 IPR036890 -
Chy10g00085 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 366 446 IPR036097 GO:0000155|GO:0007165
Chy10g00085 1004 SMART HisKA_10 380 445 IPR003661 GO:0000155|GO:0007165
Chy10g00085 1004 Gene3D - 353 443 - -
Chy10g00085 1004 Pfam CHASE domain 110 290 IPR006189 -
Chy10g00085 1004 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Chy10g00085 1004 Coils Coil 430 450 - -
Chy10g00085 1004 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155|GO:0007165
Chy10g00085 1004 Gene3D CHASE domain 111 326 IPR042240 -
Chy10g00085 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 670 IPR036890 -
Chy10g00085 1004 Pfam Response regulator receiver domain 861 992 IPR001789 GO:0000160
Chy10g00085 1004 Gene3D - 58 110 - -
Chy10g00085 1004 SMART REC_2 859 992 IPR001789 GO:0000160
Chy10g00085 1004 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310|GO:0016772
Chy10g00085 1004 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310|GO:0016772
Chy10g00085 1004 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310|GO:0016772
Chy10g00085 1004 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310|GO:0016772
Chy10g00085 1004 SUPERFAMILY CheY-like 858 997 IPR011006 -
Chy10g00085 1004 ProSiteProfiles Histidine kinase domain profile. 387 675 IPR005467 -
Chy10g00085 1004 ProSiteProfiles Response regulatory domain profile. 860 996 IPR001789 GO:0000160
Chy10g00085 1004 SMART CHASE_2 107 292 IPR006189 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00911 Chy-Chr1:8476692 Chy10g00085 Chy-Chr10:2159657 8.07E-26 dispersed
Chy01g00912 Chy-Chr1:8477399 Chy10g00085 Chy-Chr10:2159657 1.38E-10 dispersed
Chy06g02240 Chy-Chr6:26476601 Chy10g00085 Chy-Chr10:2159657 1.60E-15 dispersed
Chy07g00300 Chy-Chr7:2468997 Chy10g00085 Chy-Chr10:2159657 2.07E-62 dispersed
Chy10g00085 Chy-Chr10:2159657 Chy11g01787 Chy-Chr11:24234847 0 dispersed
Chy12g00013 Chy-Chr12:176102 Chy10g00085 Chy-Chr10:2159657 1.73E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18541 PF02518 HATPase_c 1.50E-31 CL0025 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00085 K14489 - csv:101204531 1936.38