Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00088 ATGGAAGCAGAAGGAGGATTAAGCAACAAAGGTAGTAATCATAAGGATTCTAATGGCCTTATTGATGCTTTGTTTTCTTGGGACTTTAACAATGTCTTCAATCAAAACTTCTACAAACTCAAGGTAAGAAAGATCCCAAAATCATTTGAAACAGAGGAGCAATACAAAGGCTCATATATATACCCTTTGTTAGAAGAAACAAGAGCTGAGTTGTGTTCTAATTTGAAGACAATTCAAAAAGCACCTTTCTCACAAGTGATTTCCATTGAAACTTCAAACACAAAAGAAGACAAAATCTTGTTCAATGTTAATGTTAGCTCTTGGAGAAACACTAAAGGTGGGAAGGGACAACAACCATACAAATCACTTCCAGGGGATATTTTTGTCATTTTCGACGTTGACCCTCAAACTATTACAAGTGATTATTTGGAGAAAAGCTCAAAACTTAATTGGGCTTTTGCTTGGTTAAGACAAGTTAATGACAATAATACCCCTACTCATCTGAAGCTTCATATTTCCAACAACATGGATCAACTTAAATCAACACCACTTTTCATTGTTTTTCTTATGAATCTGACAACCAACTTGAGGATATGGAAGACATTACAATGTTCTTCTAGTGGCGGGATCGTCAAGCACATTTTGGGAACTATGTCAATGGATAATAAAACTTGCAAACAATGCAATAATCAAAATGATGGAGAAGATTCAACTAAAAATATGCCAACACTAAGGTTACCATCATTATCAGTACTGAATGAATCCCAAAGAGTAGCAATAGAAAGTTGCATAAGAAAGGTTAAATGCCAACACAAACCTTCAATAGAGCTTATATGGGGTCCACCAGGGACAGGCAAAACCAAAACCACAAGTATATTACTTTGGAAAATCTTCACAATAAATCACCAGATTAGGACTCTTGCTTGTGCACCCACAAATGTTGCCATTACAAATCTTGCCTCGAAAGTTGTGAAGTTACTCAAACATGATTCCCTAAGTAGAAATCCCATCTTTTGCCCTTTGGGAGAACTGCTCTTATTTGGGAACAAAGATAGACTTAAATTTGATTCTCATCAATTGGAAGACATTTATTTGGATCGTAGGGTTGAAAAACTTTTCAAGTGTTTAGGACAATATGGTTTGAAGTTTCAAATATCATCAATGATAGGGATTTTCCAAGAAAACAAGCTATCAAAACTGAAGAGAATGTTCAAATCAAATGTTTCATCACTTTTAGAATGTGTTCATATTTTCACAACTCATATACCTAAACAAGTGATTATGGAGCATAATTGGAAAAAATTGGAGATTCTTGTTGGGTTTATTTGTGACATTGGGACCCTCTTGAGTAAAGATAATTATGATCATGATGATGATGATAAGATGGGAGAAGCTTTGATTGACTTGAAGCGTCATTGTTTGTTGGTTTTGAGGACACTTTTGGTTTCTCTTGATGAAATTGAAGTTCCAAGTAAATTGAGCAAGAATTCAATTGAGAAGTTTTGTTTTCAGAAAGCTTCATTGATTTTTAGCACAACATCAAATTCCTTCAAATTAAACAAAGTGAAAAAGAATTCACTGAATTTGGTTGTTGTTGATGAAGCTGCACAATTGAAGGAATGTGAATCCCTTATACCTTTGCAACTTCCACATATAAGCCATGCTATTCTTGTTGGCGATGAGTTCCAATTATCAGCAACAGTAAAGAGCAAGGTTTGTGAGAGAGCTAAATTCGGTAGAAGCCTTTATGAAAGGCTAAGTTTAATAGGATACTCAAAGCACCTATTAGATACACAATATAGGATGCATCCATTTGTGAGTTACTTCCCAAATTCAAAATTTTATGGGAATAAAATTATGGATGCTTCCATTGTAATGAATAAAGAGTATGAAAAAAAATACCTCCCAAGTCCTCTATTTGGTCCATATTCTTTTATCAATGTTTGTGGTGGAGAAGAAGAAAGCAATGGTGATGGACAAAGCAAGAAGAATATGGTTGAAGTAATTGTTGTTACCCAAATTGTCCAAATGCTTTACAAAGCATGGTGCAAAAACAAGAAAGATATTAGCATTGGGATAATATCTCCTTACAATGCACAAGTTTCATCAATTCAAGAAAAACTTGGAAGAAAATATGAGAAGAATAATAACGAAGGATTTGGAGTAAAAGTAAAGTCAATTGATGGTTTTCAAGGTGGTGAAGAGGATGTAATCATAATATCTACAGTTAGATCCAACAATGGACACAACATTGGATTCCTCTCAAATAAACAAAGAACCAATGTTGCTCTCACAAGAGCAAGGTTCTGCCTTTGGATTGTGGGAGATGCAAAAACTTTAGGAAAGAGCAATTCAGAGTGGAGAGATGTTATTGCTGATGCCAAGACTCGCCGATGTTTCTTTAATGTTGAGGAGAACAAAGAGTTGGCAAATGAAATGAGAATGATGAAAACTTGGCAAATGTCTGATATCAAACAGGAGATCCTCAAACTTGATAACATTTACAACAATAATCACTTCCTCAGAGTCACCGATCTTTTAGTTTGTTTGTTGCGTTGCGCCTCTCTCCCTTCTCCCACCTCACCATCTACGCCGTCGCCGCCTCCATCTCAGATTCACCTCTCCATCAGAATGGTTTGCAAATTTTCTGTGAGGTTGTTGAATATTTGTGTGTCCTCGCTTTGTAAATCTGAGCAAATGCAGAAAGCTGAAATTGTAATAACAGACGCCATTCGGTGCATGGATGCTGCTTATTCCGTTCTTTATAGAATGAGAGAAGCTAGTATTAGTCCAAATGTGATTACTTATAATTCTTTGATAGCTGCTGCAACTAAGAATGGTTCGTTAGAACAATCCCTTGATCTGTTTCAAGAAATGCTTCAATCAGGTATCACTCCTGATGCATTGTGTTACACCACTTTGATGCAATGTTACCACAAGATGGTAAAGCCAGATGAAGCCAATAGGGTTTTTGAGGAGATTCCATTGTGCATTAAAGTTACCGCTTGCCTGCTTGAGAAGTTGAAGGAAGGTTAG 3036 35.94 MEAEGGLSNKGSNHKDSNGLIDALFSWDFNNVFNQNFYKLKVRKIPKSFETEEQYKGSYIYPLLEETRAELCSNLKTIQKAPFSQVISIETSNTKEDKILFNVNVSSWRNTKGGKGQQPYKSLPGDIFVIFDVDPQTITSDYLEKSSKLNWAFAWLRQVNDNNTPTHLKLHISNNMDQLKSTPLFIVFLMNLTTNLRIWKTLQCSSSGGIVKHILGTMSMDNKTCKQCNNQNDGEDSTKNMPTLRLPSLSVLNESQRVAIESCIRKVKCQHKPSIELIWGPPGTGKTKTTSILLWKIFTINHQIRTLACAPTNVAITNLASKVVKLLKHDSLSRNPIFCPLGELLLFGNKDRLKFDSHQLEDIYLDRRVEKLFKCLGQYGLKFQISSMIGIFQENKLSKLKRMFKSNVSSLLECVHIFTTHIPKQVIMEHNWKKLEILVGFICDIGTLLSKDNYDHDDDDKMGEALIDLKRHCLLVLRTLLVSLDEIEVPSKLSKNSIEKFCFQKASLIFSTTSNSFKLNKVKKNSLNLVVVDEAAQLKECESLIPLQLPHISHAILVGDEFQLSATVKSKVCERAKFGRSLYERLSLIGYSKHLLDTQYRMHPFVSYFPNSKFYGNKIMDASIVMNKEYEKKYLPSPLFGPYSFINVCGGEEESNGDGQSKKNMVEVIVVTQIVQMLYKAWCKNKKDISIGIISPYNAQVSSIQEKLGRKYEKNNNEGFGVKVKSIDGFQGGEEDVIIISTVRSNNGHNIGFLSNKQRTNVALTRARFCLWIVGDAKTLGKSNSEWRDVIADAKTRRCFFNVEENKELANEMRMMKTWQMSDIKQEILKLDNIYNNNHFLRVTDLLVCLLRCASLPSPTSPSTPSPPPSQIHLSIRMVCKFSVRLLNICVSSLCKSEQMQKAEIVITDAIRCMDAAYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLDLFQEMLQSGITPDALCYTTLMQCYHKMVKPDEANRVFEEIPLCIKVTACLLEKLKEG* 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2289100 2297207 + Chy10G172820.1 Chy10g00088 234463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00088 1011 Gene3D - 601 816 IPR027417 -
Chy10g00088 1011 CDD SF1_C_Upf1 602 795 IPR041679 -
Chy10g00088 1011 Pfam AAA domain 579 777 IPR041679 -
Chy10g00088 1011 Gene3D Tetratricopeptide repeat domain 883 1003 IPR011990 GO:0005515
Chy10g00088 1011 TIGRFAM PPR: pentatricopeptide repeat domain 934 968 IPR002885 -
Chy10g00088 1011 Pfam PPR repeat family 931 979 IPR002885 -
Chy10g00088 1011 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 932 966 IPR002885 -
Chy10g00088 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 816 IPR027417 -
Chy10g00088 1011 PANTHER OS04G0582700 PROTEIN 12 1001 - -
Chy10g00088 1011 PANTHER DNA2/NAM7 HELICASE FAMILY 12 1001 IPR045055 -
Chy10g00088 1011 Pfam Domain of unknown function (DUF6469) 82 204 IPR045529 -
Chy10g00088 1011 Pfam AAA domain 252 571 IPR041677 GO:0004386
Chy10g00088 1011 Gene3D - 187 599 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00088 - - - cpep:111781341 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01118 Chy-Chr1:12783598 Chy10g00088 Chy-Chr10:2289100 0 dispersed
Chy07g00700 Chy-Chr7:6807389 Chy10g00088 Chy-Chr10:2289100 1.07E-56 dispersed
Chy10g00057 Chy-Chr10:1456279 Chy10g00088 Chy-Chr10:2289100 0 dispersed
Chy10g00088 Chy-Chr10:2289100 Chy09g00970 Chy-Chr9:12399012 3.10E-37 dispersed
Chy10g00088 Chy-Chr10:2289100 Chy06g02112 Chy-Chr6:25330110 2.37E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1083 . . . . . . . . . . . . . . . . . Bhi07g00157 . . Lac13g1696 . . . . . . . . . . Cone13ag0671 Cone19ag0665 . . . . Chy10g00088 Cme10g01138 . . Bda07g01445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00953 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008680 0 1 1 0 0 1 2 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00088 Chy_Chr10 FPKM 1.810304 1.834907 9.012375 8.408999 28.851263 32.133347 28.914408 7.010861 5.886968 6.250659