Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00095 ATGGAATATGTTGATATGTATTTGATTCACATTCCATTGAAGTTGAATCCTGAAGTAAGGAAAGTCCCAGTTGCAAAGGAGGATATTTCTGAAATTGATCTCAAAGGAGTTTGGGATCAAATGGAATGTTGCCAAAACCTTGGTCTCACCAAAGCTATTGGTGTCAGTAATTTCTCTCCCAAAAGGCTTCAACAACTTCTTTCCTTTGCAAAAATACCCCCACTTCTCAATCAAGTGGAGATGAGTCCACTTTGGCATCAGAATAAATTGAGGGAGTTTTGTAAAGCAAAGGACATTCATGTAACTGCCTATTCTCCCCTGGGGGCAGTTGGGACACATTGGGGACACAATAAAGTTGTGGACTCTGATGTTATTACTCAAATTGCAAAGGCCAAAGGGAAAACAAGTGCTCAGATTGCATTGAGATGGGTTTATGAGCAAGGAGTGAGCATAGTGGCAAAGAGCTTTGACAAAGAAAGAATGAGAGAGAACATCGACATTTTTGATTGGTCATTGAGTGAAGATGAATCCGATAAGATCGGCCAACTTCCTCAACACAAAGCTGTTGTGTTTGCCAATGTTTATGGCCAACATGATGTGGTTCTTGATCTTGATGCTGAGCTTTGA 627 40.51 MEYVDMYLIHIPLKLNPEVRKVPVAKEDISEIDLKGVWDQMECCQNLGLTKAIGVSNFSPKRLQQLLSFAKIPPLLNQVEMSPLWHQNKLREFCKAKDIHVTAYSPLGAVGTHWGHNKVVDSDVITQIAKAKGKTSAQIALRWVYEQGVSIVAKSFDKERMRENIDIFDWSLSEDESDKIGQLPQHKAVVFANVYGQHDVVLDLDAEL* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2430798 2431804 - Chy10G172890.1 Chy10g00095 234470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00095 208 SUPERFAMILY NAD(P)-linked oxidoreductase 2 193 IPR036812 -
Chy10g00095 208 Gene3D - 1 200 IPR036812 -
Chy10g00095 208 ProSitePatterns Aldo/keto reductase family signature 2. 41 58 IPR018170 GO:0016491
Chy10g00095 208 PRINTS Aldo-keto reductase signature 119 143 IPR020471 GO:0016491
Chy10g00095 208 PRINTS Aldo-keto reductase signature 75 104 IPR020471 GO:0016491
Chy10g00095 208 PRINTS Aldo-keto reductase signature 41 58 IPR020471 GO:0016491
Chy10g00095 208 PANTHER ALDO/KETO REDUCTASE 1 207 - -
Chy10g00095 208 PANTHER D-GALACTURONATE REDUCTASE-LIKE 1 207 - -
Chy10g00095 208 Pfam Aldo/keto reductase family 2 180 IPR023210 -
Chy10g00095 208 ProSitePatterns Aldo/keto reductase family putative active site signature. 152 167 IPR018170 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00095 K19642 GALUR; D-galacturonate reductase [EC:1.1.1.365] - csv:105434417 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00684 Chy-Chr5:8791544 Chy10g00095 Chy-Chr10:2430798 3.81E-113 dispersed
Chy08g00723 Chy-Chr8:15005963 Chy10g00095 Chy-Chr10:2430798 3.71E-11 dispersed
Chy10g00095 Chy-Chr10:2430798 Chy08g00722 Chy-Chr8:14998194 3.08E-47 dispersed
Chy10g00095 Chy-Chr10:2430798 Chy10g00097 Chy-Chr10:2479260 4.09E-152 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1075 Blo01g00385 . . . . . . . . . . . . . . . . Bhi07g00153 . . . Hepe01g0358 . . . . . . . . . . . . . . . Chy10g00095 Cme10g01125 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01008 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003041 0 2 2 1 1 2 1 2 2 3 2 2 1 2 3 1 2 2 1 2 3 1 3 2 2 2 1 1 1 3 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00095 Chy_Chr10 FPKM 3.780193 5.57647 25.210266 28.052181 2.859494 2.546657 2.731402 60.927834 63.814754 56.902058