Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00122 ATGGGTATCACAGGGTCTTGGATTACAAAGTCTTATCTGGAGATGATTCTGGAAAGAAAAGGTGTACCACGATTAAATACACCTCCACTTCTACCAAACACACCTCTGGCTAATAACCAAGAAAAGGTTGTCATTGCTCCCAGGCCCATCCGTGTTACTTCAAATCTTGTTTCTCGACTTGAGGATCTTTCTCAGCCGTGGACCAGATCTCCAACAAAATCTCAAATGGAACCAGTAGTTGCAACGTGGCAATTTATTAGCGCTCCCCAATCTGATAATTTAGTGACTGATCCCGCCTCTTTCAGGGACTCTATGAGGCTTGCTCCAATGCCTGATTCATGTGACCTGGACAGAGGTTTGCTTTTAGCTGTTCAAGCGATTCAGGCGTTATTGGAGAACAAAGGTCTTCCTATTATTGTTGGAATTGGTGGTCCAAGTGGGTCAGGAAAGACTAGTTTAGCTCATAAAATGGCTAATATTGTTGGATGTGAAGTAATTTCGCTTGAAAGTTATTACAGATCAGAGCAAGTGAAGGATTTCAAGTATGATGATTTCAGCACACTTGATTTGTCGCTGCTATCCAAGAATATTGATGACATGAGAAATGGTCGAAGAACAAAAGTACCGCTTTTTGACTTGGAGACTGGTGCGCGAAGTGGTTTTAAGGAGCTTGAAGTTTCTGAAGACTGTGGAGTGATAATTTTCGAAGGAGTATATGCTTTACATCCAGACATCAGGAAATCACTTGACTTATGGATTGCTGTTGTTGGAGGTGTTCATTCGCATCTCATTTCTCGAGTCCAAAGAGATAAATGTAAAGCAGGGTGTTTCATGTCACAAAATGACATAATGATGACGGTTTTCCCTATGTTCCAGCAGCACATCGAACCACATCTTGTTCATGCACATCTAAAAATACGGAATGACTTTGATCCTGTGCTTTCACCTGAGAGCTCATTATTTGTACTGAAGAGTAACAAGCAGGTTGCTTATCAAGATATACTCAAACTTCTTGAATCATCAAAGGCTTGCAGTTCTATACAAAATTTCATTGATATATATTTGAGGCTTCCAGGAATTCCTACAAAGGGACAGTTGACAGAGAGTGATTGTATACGAGTTAGAATTTGTGAAGGCCGATTTGCGTTGTTAATACGTGAGCCTATAAGAGAAGGGAATTTCATCATTCAACCAAAGGTGGACTTTGACATTAGTATTAGTACAGTCGCTGGCCTTCTTAATCTTGGGTATCAAGCCATGGCTTATATTGAAGCATCTGCGTACATCTACCAAGATGGAAAGATTCTAATTGAGGTTGACCATTTACAAGATGCTCCTTGTCCCTATCTCCAAATAAAAGGGGTTGATAAAGAAGCTGTTGCAGCAGCTGGTTCCATGCTCGAACTGAATGATTCTTATACTACAAAGAGCTATCTTCAAATAATTTTGGAAAGTTTGCCACCGAACCGGAGTTCTGGCCTAATCCATAATCATCAAGCTGCAAGGCTGCAAGAACTTGTGGAATTTATTCAATCTCAGGGTAGTAGTACAGCTTCAGAATCCTCCCCTAGTAGAGAAGCATCATCTCCATTGGAAGGGATCATTGAGGACATGCAGTCCAGAATTAGAAGACTTGAACGATGGCTTGCAATTAATACAATTTTGTGGACCTTTTTTGTTTCCGCCTTTGTTGGTTATTCACTCTACCGGACCAAGCGTCAGTGA 1725 40.87 MGITGSWITKSYLEMILERKGVPRLNTPPLLPNTPLANNQEKVVIAPRPIRVTSNLVSRLEDLSQPWTRSPTKSQMEPVVATWQFISAPQSDNLVTDPASFRDSMRLAPMPDSCDLDRGLLLAVQAIQALLENKGLPIIVGIGGPSGSGKTSLAHKMANIVGCEVISLESYYRSEQVKDFKYDDFSTLDLSLLSKNIDDMRNGRRTKVPLFDLETGARSGFKELEVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKCKAGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKLLESSKACSSIQNFIDIYLRLPGIPTKGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAMAYIEASAYIYQDGKILIEVDHLQDAPCPYLQIKGVDKEAVAAAGSMLELNDSYTTKSYLQIILESLPPNRSSGLIHNHQAARLQELVEFIQSQGSSTASESSPSREASSPLEGIIEDMQSRIRRLERWLAINTILWTFFVSAFVGYSLYRTKRQ* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3171248 3202220 - Chy10G173160.1 Chy10g00122 234497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00122 574 Pfam Phosphoribulokinase / Uridine kinase family 139 306 IPR006083 GO:0005524|GO:0016301
Chy10g00122 574 PRINTS Uridine kinase signature 164 175 - -
Chy10g00122 574 PRINTS Uridine kinase signature 260 270 - -
Chy10g00122 574 PRINTS Uridine kinase signature 137 154 - -
Chy10g00122 574 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 226 565 - -
Chy10g00122 574 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 46 - -
Chy10g00122 574 SUPERFAMILY CYTH-like phosphatases 338 481 IPR033469 -
Chy10g00122 574 CDD UMPK_like 139 309 - -
Chy10g00122 574 Gene3D - 136 317 IPR027417 -
Chy10g00122 574 Gene3D - 324 486 - -
Chy10g00122 574 PANTHER URIDINE KINASE 1 46 - -
Chy10g00122 574 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 103 226 - -
Chy10g00122 574 PANTHER URIDINE KINASE 226 565 - -
Chy10g00122 574 PANTHER URIDINE KINASE 103 226 - -
Chy10g00122 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 309 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00122 - - - csv:101220584 1091.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00122 Chy-Chr10:3171248 Chy10g01088 Chy-Chr10:15972642 4.22E-63 dispersed
Chy10g00122 Chy-Chr10:3171248 Chy10g00123 Chy-Chr10:3203222 1.68E-58 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1031 . . . . . . Bma14g01683 . . . . . . . . . . Bhi07g00113 . . Lac13g1620 Hepe01g0410 . . . . . . . . . . . . . . . Chy10g00122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00122 Chy_Chr10 FPKM 6.188495 6.466963 6.022152 5.886196 4.670219 4.760067 4.339387 4.846779 4.00812 4.395085