Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00178 ATGAGGGGAGGACAAGGGGATACAGGAAATGGGATTGAGGCGGTGGCTGGATCAAATAATCCAAGACCGGAGACCGCAGCTCCACCATCGGAAGGGGGTGGTCCGGCGGGTTCTGCAGCGGAGGCAGGGAAGAAGAAGAGGGGGAGACCGAGGAAGTACGGGCCGGACGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCCATATCGGCGTCGGCACCGGCACCGGCGGCTGTTATTGATTTTTCGGCGGAAAAACGTGGAAAAGTGCGGCCGGCGAGTTCCTTGACCAAAACCAAATATGAATTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCCAATTTTACACCCCATATCATCACCGTAAGCAGTGGGGAGGACGTAACAATGAAGGTTCTCTCATTCTCTCAACAAGGACCTCGAGCAATCTGCATTCTGTCTGCTAACGGCGTGATTTCGAGCGTAACGCTTCGTCAACCCGACTCCTCTGGTGGAACCTTAACATATGAGGGTCGTTTTGAAATATTGTCGTTGTCGGGATCATTCATGCCGAGTGACAGTATAGGAACAAAGAGCAGAATTGGTGGAATGAGTGTCTCCTTAGCAAGCCCAGATGGACGAGTTGTTGGTGGTGGAGTTGCTGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTATATCTGGAAACCAACATGAGCCAAAGCCGAAGAAGTCAAAACACGACGTTGTATTGCCGGTTTCTACTTTTCCAATCTCTAGTGTTGAACCAAAATCATACAAGATGACGACAACGACGACATCTTCGTTTCGTGCTGAAACATGGTCACCTAATGTAGTTCCAGATTTAAGAAGTCAACCAACTGATATCAATGTATCATTAACTAGTGGTTGA 915 49.07 MRGGQGDTGNGIEAVAGSNNPRPETAAPPSEGGGPAGSAAEAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPASSLTKTKYELENLGEWVPCSVGANFTPHIITVSSGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSIGTKSRIGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFISGNQHEPKPKKSKHDVVLPVSTFPISSVEPKSYKMTTTTTSSFRAETWSPNVVPDLRSQPTDINVSLTSG* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4339040 4341503 + Chy10G173720.1 Chy10g00178 234553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00178 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 301 IPR039605 GO:0003680
Chy10g00178 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 27 301 - -
Chy10g00178 304 ProSiteProfiles PPC domain profile profile. 115 260 IPR005175 -
Chy10g00178 304 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 233 IPR005175 -
Chy10g00178 304 CDD DUF296 119 210 IPR005175 -
Chy10g00178 304 Gene3D - 120 251 - -
Chy10g00178 304 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 239 - -
Chy10g00178 304 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01143 Chy-Chr9:13662780 Chy10g00178 Chy-Chr10:4339040 3.73E-121 dispersed
Chy09g01218 Chy-Chr9:14286633 Chy10g00178 Chy-Chr10:4339040 4.62E-50 dispersed
Chy10g00178 Chy-Chr10:4339040 Chy11g01635 Chy-Chr11:22872895 5.31E-60 dispersed
Chy10g00178 Chy-Chr10:4339040 Chy09g00976 Chy-Chr9:12454527 2.50E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00178 - - csv:101205374 496.508