Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00211 ATGATGATTTCTTCTTGGAGACGCCGGAGAGCAACTCGGCGAATGGCAAGGGGTGGTCTAAGCGACACAATCGAGTTGACGATTCCGACCCATTTTCGATGCCCGATATCGCTCGACTTGATGAAAGATCCAGTGACTTTGTCGACCGGTATCACCTATGATCGAGCTAGCATTGAGACCTGGATTGAAGGAGGGAATTTCACCTGCCCTTTCACCAACCAACCATTGCAAACTATTGATTCTATTCCTAATCATAACATAAGGAAGATGATTCAAGATTGGTGTGTTGAGAATAGAGCTTATGGGATTGAGAGGATTCCGACCCCGAGGGTTCCGGCTAGTCCGGCACAAGTTCGGGAAATTCTTGAAAAGATGGCCGCTGCGGCACGGCGAGGGGATTGTGATGGATGCAAGTCCATGGTGGAGAAGATCAAGAAATTGGGAAAAGAAAGTGAAAGGAACAAGAAATGTATTATTGCCAATGGAACAGGTAATACATTATCATCAATATTCGAAGCGTTTTCGAAGCCCGAAACATTCGAGAAAAGAATGGAAATTTTAGAGGAAATTTTATCAGCCATGACAGTGGTGTTCCCGCTACAAGAAGAATCCATTAAACACTTGAAATCGGAAACTTCATTACAATCATTGGTATGGTTTTTAAAAGGTGGAGACATTTCAGGAAGAAGAAATTCAGTTTTGGTTTTGAAAGAGATAATTTCATCATACCCAGAAAAAGTGGATGAATTAGGTGAAACCCAAGGAGCATTAGAGGGTCTTATTAAGCTCATAAAAGATCCAATTTGCTCATCTTCAAAAAAAGCTTCACTTTTCATAACATATCATGTTATAGCCTCAACTTCTTCTTCTTCCAATCGGGAGAGATTCACAAAAGAACTTCTTCAACTGGGGTTGGTCTCGTTGCTACTCGAAACCCTAGTTGACGCCGAGAGAAGCGTATGTGAGAGAGCGCTGGGAGCGTTCGACGGCATTTGCGAGACCAAACAAGGAAGAGAAGAGGCGTATGGCCATGCTCTAACGATGCCTGTGATCGTGAAAAAGATACTTAGAGTATCGGATTTAGCCACCGAATTATCGGTGTGCATTGTTTGGAAGCTTGTAAAGCATGAGAGTAAAGAGGAAGAAGATGGAGGGATTAAGGTAGAAGCACTTCAAGTGGGAGCATTTCAAAAGCTTTTGTTGTTGTTGCAAGTTGGTTGTAGTGAATGGACAAAGGAGAAAGCAACAGAGCTGTTAAAACTCTTGAATAATCTTCATAGGGATAGGTTAGAATGTATTGATTCTTTAGATTTTAAGGACCTCAAAAGAACATTTTGA 1338 41.85 MMISSWRRRRATRRMARGGLSDTIELTIPTHFRCPISLDLMKDPVTLSTGITYDRASIETWIEGGNFTCPFTNQPLQTIDSIPNHNIRKMIQDWCVENRAYGIERIPTPRVPASPAQVREILEKMAAAARRGDCDGCKSMVEKIKKLGKESERNKKCIIANGTGNTLSSIFEAFSKPETFEKRMEILEEILSAMTVVFPLQEESIKHLKSETSLQSLVWFLKGGDISGRRNSVLVLKEIISSYPEKVDELGETQGALEGLIKLIKDPICSSSKKASLFITYHVIASTSSSSNRERFTKELLQLGLVSLLLETLVDAERSVCERALGAFDGICETKQGREEAYGHALTMPVIVKKILRVSDLATELSVCIVWKLVKHESKEEEDGGIKVEALQVGAFQKLLLLLQVGCSEWTKEKATELLKLLNNLHRDRLECIDSLDFKDLKRTF* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5384153 5385633 + Chy10G174050.1 Chy10g00211 234586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00211 445 PANTHER WDSAM1 PROTEIN 10 445 IPR045185 GO:0061630
Chy10g00211 445 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Chy10g00211 445 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Chy10g00211 445 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 445 - -
Chy10g00211 445 Pfam U-box domain 28 99 IPR003613 GO:0004842|GO:0016567
Chy10g00211 445 SUPERFAMILY RING/U-box 22 104 - -
Chy10g00211 445 CDD RING-Ubox_PUB 32 74 IPR045210 -
Chy10g00211 445 SUPERFAMILY ARM repeat 191 422 IPR016024 -
Chy10g00211 445 Gene3D - 116 425 IPR011989 -
Chy10g00211 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 104 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00211 - - - csv:101213919 824.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01338 Chy-Chr6:12838302 Chy10g00211 Chy-Chr10:5384153 6.53E-148 dispersed
Chy10g00211 Chy-Chr10:5384153 Chy11g00038 Chy-Chr11:452063 1.72E-32 dispersed
Chy10g00211 Chy-Chr10:5384153 Chy05g00202 Chy-Chr5:1692654 1.03E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0725 Cone19ag0724 . . . . Chy10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01122 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010787 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00211 Chy_Chr10 FPKM 6.773608 7.195982 4.177922 4.982946 2.052477 1.632342 2.139066 6.333816 5.939536 6.870989